Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01534 ATGGAATGTTCCAAAGATTATGCCTTAAGGACTAAAAGGATGGAAAAGAAGAGGTTCTTACAGGAACATTTTGGTGTTGCAAAACTACTTGCAACGAAGGCTCGGCCCTGCGAGGTTCATGGTGCACAGCCCTTGGATGATGATAAAACTATTCGGAAATGTTACAGGCAGATGGCTCTTACTCTGCATCCGGATAAAAACAAGTCGGTGGGTGCAAATGGCACATTTAAGCTGGTTTCTCAGGTGTGGACTGTATTATCTGATAAAGCTAAGAGAGCCGCCTTTGATCAAAAGTGCCGCTTATGGGAGTCCTTCAAAAGAATTATTGGTGGTATACGTATACCTTGGAATAGTTTGTTTGATACTGCTAACCTTGGTGGGAAATCTTCTGAACCTGCTACTCAGGGTGGTTTGTTTAAGCTGCTAACCGGAAGGACAGATCTCGCGAGTGGCGCTCATACCAATCCTACTCCAAGACCTTTTGTACCTACTAGTTATAATGGTTTGTTTAATTCTCCTATCGGGAAGGACATAGATCATATGAGTGCAATTTCTGCAGGACACACTATGAGTACTTTGCTGTTTATAGAAACTGCAAAATTGTCCTTTTTCTATGCCGAGTGGCATTTCCAGTGGACCGACATCAGTTTCTACGCTTCTGGAGCTCTTGGTCTTTTTAACAGACCATCTGTGAATTTGAAGAGAAGGCATGAAGATTCGACACCTCTCATGAATGAGGAGACACATTTTGGGAAAACTCATGTTGTTGAAAGAGCTGTTGCGGGTTCATATTTTCATCCCTCTTGGAAAGAAGAAAAAAAAGGTGCACAGAATAGTTTTGATGCAGGAAAGGTTAGTGCTGCCAGAAATTCCAGACGAAATGGTATTAGGGGCACGTCTCAGCCTAAAATGAGGAACATCTTGATGGAAAAGGCTCGGAAGGAGATTTGTAAGAAACTTCATGGTGGAAGGAGAGTCTTAGAAAGCTTGATGAGTGGAAGGTAA 1005 0.4249 MECSKDYALRTKRMEKKRFLQEHFGVAKLLATKARPCEVHGAQPLDDDKTIRKCYRQMALTLHPDKNKSVGANGTFKLVSQVWTVLSDKAKRAAFDQKCRLWESFKRIIGGIRIPWNSLFDTANLGGKSSEPATQGGLFKLLTGRTDLASGAHTNPTPRPFVPTSYNGLFNSPIGKDIDHMSAISAGHTMSTLLFIETAKLSFFYAEWHFQWTDISFYASGALGLFNRPSVNLKRRHEDSTPLMNEETHFGKTHVVERAVAGSYFHPSWKEEKKGAQNSFDAGKVSAARNSRRNGIRGTSQPKMRNILMEKARKEICKKLHGGRRVLESLMSGR 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01534 334 ProSiteProfiles dnaJ domain profile. 35 99 IPR001623 -
Vifa3g01534 334 SUPERFAMILY Chaperone J-domain 41 114 IPR036869 -
Vifa3g01534 334 Pfam DnaJ domain 45 96 IPR001623 -
Vifa3g01534 334 CDD DnaJ 47 88 IPR001623 -
Vifa3g01534 334 Gene3D DnaJ domain 34 100 IPR036869 -
Vifa3g01534 334 MobiDBLite consensus disorder prediction 275 302 - -
Vifa3g01534 334 PRINTS DnaJ domain signature 71 91 IPR001623 -
Vifa3g01534 334 PRINTS DnaJ domain signature 37 55 IPR001623 -
Vifa3g01534 334 PRINTS DnaJ domain signature 55 70 IPR001623 -
Vifa3g01534 334 SMART dnaj_3 34 91 IPR001623 -
Vifa3g01534 334 PANTHER BNAC03G44070D PROTEIN 39 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01534 Vifa-Chr3 398766019 398767307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01534 47 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 43.636 6.02e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01534 - - mtr:11421300 177.948