Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01528 ATGAAAATATATACTACAACAGCAGTTCTGGCTAATCCTTGGTGGACAATTCAAGGAGGGTTATCTGGTGTTGACCCAGGAACCCATTCACCTACTGGTTATAACAAACATCACAACACAAACCTTACGATTAACGAGAATCGTGATGAAGAAGAAGAAGACGATGATGACAACAGAGATGAACCGAGAGAAGGCGCGGTTGAAGTTGGAAACCGGAGACCAAGAGGAAGACCACCTGGATCTAAAAATAGACCTAAACCTCCTATCTTTGTAACAAGAGATAGTCCAAATGCTTTGAAGAGCCATGTGATGGAGGTAGCTGGGGGAGCCGACATAGCAGAAAGTGTAGCGCAGTTTGCAAGGAGGCGTCAACGCGGTGTTTGTGTTCTCAGTGGAAGTGGCTCTGTGGCTAATGTTACTCTTAGACAACCTTCAGCTCCTGGTGCTGTTGTAGCACTGCATGGTAGGTTTGAGATCTTGTCCTTAACGGGAACGTTTCTACCTGGTCCTGCTCCACCAGGTTCAACTGGTTTAACAGTGTACCTGGCCGGAGGTCAGGGTCAGGTAGTTGGAGGTTGTGTTGTTGGAGCTCTTGTTGCAGTTGGGCCTGTTATGCTTATTTCCGCTACTTTTACTAACGCGACTTATGAAAGACTTCCACTCGAAGATTCTGATAATGATAATGAAAATAACAATGAAGGGCCTAGTTCTGCGGCCGCCATGCAAGGAGCAGGGTTAGGTGGATCTCCTCCATCGGGAATTGCTCATCAGTTACAAGGTGTGATTCCAGATCCATCTTCTATGCCTTCGTATAATTTGCCACCAAATTTGTTGCCTAATAATGGAGGGCAGATGGGACATGAGGCCCTTGCTTGGGCTGCTGCTCATGGAAGGCCACCTTATTAA 906 0.4658 MKIYTTTAVLANPWWTIQGGLSGVDPGTHSPTGYNKHHNTNLTINENRDEEEEDDDDNRDEPREGAVEVGNRRPRGRPPGSKNRPKPPIFVTRDSPNALKSHVMEVAGGADIAESVAQFARRRQRGVCVLSGSGSVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGCVVGALVAVGPVMLISATFTNATYERLPLEDSDNDNENNNEGPSSAAAMQGAGLGGSPPSGIAHQLQGVIPDPSSMPSYNLPPNLLPNNGGQMGHEALAWAAAHGRPPY 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01528 301 FunFam AT-hook motif nuclear-localized protein 99 227 - -
Vifa3g01528 301 MobiDBLite consensus disorder prediction 220 282 - -
Vifa3g01528 301 PIRSF ESCAROLA 18 301 IPR014476 GO:0003680
Vifa3g01528 301 CDD DUF296 100 183 IPR005175 -
Vifa3g01528 301 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 296 IPR014476 GO:0003680
Vifa3g01528 301 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 225 - -
Vifa3g01528 301 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 212 IPR005175 -
Vifa3g01528 301 Gene3D - 100 229 - -
Vifa3g01528 301 ProSiteProfiles PPC domain profile profile. 96 233 IPR005175 -
Vifa3g01528 301 MobiDBLite consensus disorder prediction 47 61 - -
Vifa3g01528 301 MobiDBLite consensus disorder prediction 26 96 - -
Vifa3g01528 301 MobiDBLite consensus disorder prediction 26 41 - -
Vifa3g01528 301 MobiDBLite consensus disorder prediction 263 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01528 Vifa-Chr3 395999892 396000934 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01528 10 301 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 59.732 3.72e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01528 - - var:108341460 356.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01528 3 395999892 396000934 Vifa3g01528 3 395999892 396000934 ECH