Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01527 ATGGTAAAAGCAATAGTATCTGTGCTGTTGATTACTTCTATTGTGTTGTGTGTATCTGCGACGGATAATGGATTTCCGAGATGTAATTGCGACGATGAAGCGAGTTTGTGGACTATTGAGAGCATTTTGGAGTGTCAAAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTCTCGATCCCGATTGAACTGCTTTATTTTGTCAGTTGCTCAAACGTCCCTTTCAAATGGGTCCTTGTTCAGTTCATTGCCTTCATAGTACTATGTGGATTGACACATTTGTTGAATGGTTGGACTTATGGTCCTCACACTTTTCAGCTTATGGTGGCACTTACTATCTTTAAGATTCTCACTGCGTTGGTGTCTTGTGCTACCGCGATAACACTTGTCACTTTGATTCCTTTACTCCTCAAAGTTAAGGTCAGGGAATTCATGCTCAAGAAAAAGACATGGGATCTTGGACGGGAGGTTGGTCTTATTATGAAGCAACAGGAGGCGGCGGTGCATGTAAGAATGCTTACTCAAGAGATTCGCAAGTCACTCGATAGACATACGATTCTGTATACCACTTTGGTGGAGCTTTCTAAAACTCTAGGCCTGCAGAATTGCGCTGTGTGGATGCCTAATGAAGAAAAGACAGTGATGAATCTCACTCATGAATTGAACGGAAGGAATTTGAATATTTCTATACCGATTACTGATCTCGATGTTGTAAAGATTAAGGGAAGCAGTGTAGTGAATATACTTAGCTCTGACTCGGCGCTTGCTGTTTCCAGTTGTGTGGTTTCTGGTGATGCAGGACCGGTTGCTGCAATCCGAATGCCAATGTTACGGGTTTGTAATTTCAAAGGAGGAACACCTGAACTAACTCAGGCGTGTTATGCAATATTGGTCTTGATTCTTCCGGCCGGAGAGCCTAGATCTTGGAGCAATCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAAGTTGCTGTAGCTCTATCCCATGCTGCGATTCTTGAAGAGTCTCAACTTATGAGAGAGAAATTGGAGGAACGCAATCGAGCTTTGCAACAGGCGAGAAGGAATGCAATGATGGCAAGCCAGGCAAGAAATTCATTTCAGAAAGTCATGAGCGATGGTATGAGGAAACCTATGCACTCAATTTTGGGATTGCTTTCAATGATACAAGACGATAGTTTAAAGAATGAACAGAAACTTATTGTGGACGCAATGCTAAGGACAAGCAATGTGCTATCAAACTTGATAAACGATGCCATGGACAGCTCTGCAAAGGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTCGGGCTACATTCCATGATAAAAGAAGCAGCTTGCCTTGCTAAATGCATGTGTGTTTATAAGGGCTTGGGTTTTATCGTCGAGGTTGATAAGTCTTTACCAAACAATGTTATGGGTGATGAGAGGAGAGTTTTCCAGGTGATTTTGCATATGGTTGGGAATCTACTGGATTGCAACCATGGAGAAGGAGGGATCCTTGTATTCCGGGTTTCAGCAGATGCTGGAAGTCAAGGGAGGAATGAGAAAGGGTGGACAACCTGGAGACCAAGCTCATCTAGCGGAGATGTAAATATTAGATTTGAGATAGGGATCACCACCAGTAGCGATTCTGAAGTTGGGAGCTCAGTTTCCTCGGGACCCGGTGGTAGGACATATACCAGTGATAGGTATGAGGGCAGATTGAGCTTTAGTATTTGCAAGAGGATAGTCCAGTTGATGCAAGGGAACTTATGGTTGGTACCATACACTCATGGCATTCCTCAAAGCATGACACTTCTTCTCCGGTTTCAACTACGACCGTCCATTGCAATAGCCATCTCCGAACCCGGCGAATCCTCAGAACGCACGTATTCCAATTCAATGCTGAGAGGTCTGCAAGTTCTATTAGTTGACAACGACGATGTAAATAGAGCAGTCACACAGAAACTGCTTCAAAAACTCGGCTGTTCCGTCACTTCCGCTTCTACAGGATTCGAATGCCTCACTCTCATCGGCCCCGTCGGATCTTCCATCCAAGTCATTCTCTTAGATCTCCAAATGCCTGACATAGACGGCTTCGAAGTCGCCGCAAGGATCCGGAAGTTCAAAAGCGGAAACAGGCCTATGATTATTGCATTAACAGCAAGCGCAGAAGAAGATCTCTGGGAAAGATGTATGCAGATTGGCGTAAATGGAGTAATCCGAAAACCGGTTTTGTTGCAAGGAATCGCTAGTGAACTCAGAAGAATTCTCATGCAGGGGAATATATAG 2280 0.4399 MVKAIVSVLLITSIVLCVSATDNGFPRCNCDDEASLWTIESILECQRVGDFLIAVAYFSIPIELLYFVSCSNVPFKWVLVQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTIFKILTALVSCATAITLVTLIPLLLKVKVREFMLKKKTWDLGREVGLIMKQQEAAVHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNEEKTVMNLTHELNGRNLNISIPITDLDVVKIKGSSVVNILSSDSALAVSSCVVSGDAGPVAAIRMPMLRVCNFKGGTPELTQACYAILVLILPAGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEERNRALQQARRNAMMASQARNSFQKVMSDGMRKPMHSILGLLSMIQDDSLKNEQKLIVDAMLRTSNVLSNLINDAMDSSAKDDGRFPLEIRSFGLHSMIKEAACLAKCMCVYKGLGFIVEVDKSLPNNVMGDERRVFQVILHMVGNLLDCNHGEGGILVFRVSADAGSQGRNEKGWTTWRPSSSSGDVNIRFEIGITTSSDSEVGSSVSSGPGGRTYTSDRYEGRLSFSICKRIVQLMQGNLWLVPYTHGIPQSMTLLLRFQLRPSIAIAISEPGESSERTYSNSMLRGLQVLLVDNDDVNRAVTQKLLQKLGCSVTSASTGFECLTLIGPVGSSIQVILLDLQMPDIDGFEVAARIRKFKSGNRPMIIALTASAEEDLWERCMQIGVNGVIRKPVLLQGIASELRRILMQGNI 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01527 759 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Vifa3g01527 759 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 592 IPR036890 -
Vifa3g01527 759 FunFam Ethylene receptor 633 757 - -
Vifa3g01527 759 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
Vifa3g01527 759 Pfam GAF domain 182 328 IPR003018 GO:0005515
Vifa3g01527 759 Coils Coil 334 361 - -
Vifa3g01527 759 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 756 - -
Vifa3g01527 759 Pfam His Kinase A (phospho-acceptor) domain 365 428 IPR003661 GO:0000155|GO:0007165
Vifa3g01527 759 FunFam Ethylene receptor 4 331 425 - -
Vifa3g01527 759 Gene3D - 428 607 IPR036890 -
Vifa3g01527 759 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Vifa3g01527 759 Gene3D - 161 329 IPR029016 -
Vifa3g01527 759 Gene3D - 635 758 - -
Vifa3g01527 759 Gene3D - 330 427 - -
Vifa3g01527 759 SUPERFAMILY GAF domain-like 185 331 - -
Vifa3g01527 759 SMART gaf_1 182 338 IPR003018 GO:0005515
Vifa3g01527 759 SMART REC_2 635 754 IPR001789 GO:0000160
Vifa3g01527 759 SUPERFAMILY CheY-like 632 754 IPR011006 -
Vifa3g01527 759 Pfam Response regulator receiver domain 637 744 IPR001789 GO:0000160
Vifa3g01527 759 PIRSF Ethylen_sen_hybr_HK 1 759 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Vifa3g01527 759 CDD REC_ETR-like 635 750 - -
Vifa3g01527 759 CDD HATPase_ETR2_ERS2-EIN4-like 470 604 - -
Vifa3g01527 759 ProSiteProfiles Response regulatory domain profile. 636 754 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01527 Vifa-Chr3 394829234 394831933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01527 22 754 Miscellaneous Gene Families AT3G04580 58.043 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g01527 HATPase_c 3.9e-06 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01527 K14509 - gmx:100787425 1279.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01527 3 394829234 394831933 Vifa3g01527 3 394829234 394831933 ECH