Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01503 ATGTTGCAGGATGTTTTTGATCCGCCACTCCCATCAAATTCAAATCCAGATCCACAACAACATCAACAACAACAGCAACTCTCCGTTGATGAAATTTCAAGCCCTCTTAGCGCGGCGCAAATTTTCGAGCTATGTAACCCTGAGTTATTTCCAGAAACTTTGCAGAATTCTGAGGTTACATCAAGCTCAAATTGTTGCTATGAAGAGAATTCTTCATATGCAACAAATATATTAGATGTAGAAACTAAGTTCAATAATAGCAATAGCAATAACACAGTAGTCGTCACAACTCCAACTAGAACCAACAACATCAACAACAATAATAACAATAACAATAATCTATCTGTTATCTTTGATTCACAAGAAGAAATCGACAATGACATATCTGCCTCCATAGATTTCTCACTATCGCCATCTTTCAATGTTCATTCATTCCTTCCAGTAACATCATCACAGCAAGTAGAACAATTTGATTTCAATTCGCATGTTCAACAGCTAACAGCATGTTCGTCTGTCGAAGGCTTTTCACAGTATCATAACCCAAATGATTCAGTTGCACCTCTTATGGGAGCTCCATTATCATTGCCACCTGTTTTTGAAGAGGATTGCATAACTTCTGTACCTTCTTATGTTCCTTTGAATCCTTCATCTCCTTCTTGCAATTATCTTAGTCCTGCTGGAATGGCCGGGTACATGCCTAATGGCCCTCTTACCACTGCTTTGTCTGCTGATAGTTCTGCTTTGTTTGGTGGAAACATTCTTCTTGGTCCTGAACTTCAGACACAAGAACTTGATTATCAAGGAGACAGTGGTAGAATTTTTTGCGCTGATCCTATTCAGAGGGTGTTTAACCCTCCCGATCTTCAGGCACTTAATACGGAGAATCAACAACTAGTAGCTGGTTCTGGAAGTTCTGCCAGTTTAACACCAGAAATCTCAAACTTGGAAGACTCTACATTCAAGGTTGGAAAGCTTTCTGTTGAAGAAAGGAAAGAAAAGATTCACAGATACATGAAGAAAAGAAATGAAAGAAACTTCAGCAAGAAGATTAAGTATGCATGTCGCAAAACACTGGCTGATAGCAGGCCTCGAGTTCGAGGAAGATTCGCAAAGAATGATGATTTTGGAGAGGCACAAAGAACTGCTAGTGGAAATCATGAAGAAGAAGATGAAGAAGAGGTAGTTGTGAAAGAGGAAGATGATATGGTTGATTCTTCAGATATATTTGCTCATATCAGTGGAGTGAACTCATTCAAATGCAACTATTCTATTCAATCATGGATTTAA 1287 0.3862 MLQDVFDPPLPSNSNPDPQQHQQQQQLSVDEISSPLSAAQIFELCNPELFPETLQNSEVTSSSNCCYEENSSYATNILDVETKFNNSNSNNTVVVTTPTRTNNINNNNNNNNNLSVIFDSQEEIDNDISASIDFSLSPSFNVHSFLPVTSSQQVEQFDFNSHVQQLTACSSVEGFSQYHNPNDSVAPLMGAPLSLPPVFEEDCITSVPSYVPLNPSSPSCNYLSPAGMAGYMPNGPLTTALSADSSALFGGNILLGPELQTQELDYQGDSGRIFCADPIQRVFNPPDLQALNTENQQLVAGSGSSASLTPEISNLEDSTFKVGKLSVEERKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGEAQRTASGNHEEEDEEEVVVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01503 428 MobiDBLite consensus disorder prediction 1 29 - -
Vifa3g01503 428 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 94 391 IPR045281 GO:0009909
Vifa3g01503 428 Pfam CCT motif 330 372 IPR010402 GO:0005515
Vifa3g01503 428 ProSiteProfiles CCT domain profile. 330 372 IPR010402 GO:0005515
Vifa3g01503 428 MobiDBLite consensus disorder prediction 366 387 - -
Vifa3g01503 428 MobiDBLite consensus disorder prediction 366 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01503 Vifa-Chr3 388982385 388984996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01503 310 378 C2C2-CO-like Transcription Factor Family AT5G24930 42.029 1.69e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa3g01503 CCT 5.7e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01503 - - aprc:113871720 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01503 3 388982385 388984996 Vifa3g01503 3 388982385 388984996 ECH