Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01488 ATGTATTCAGGAGTGATGGAAAGTAACAGAGAATGGAGTGTTATGGAAGAAGATAGATGGCGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTGCTCATTGAGTATGTCAAGCTGCATGGTGAAGGCAGATGGAACTCTGTTGCTAGGCTTACAGGATTGAGAAGAAATGGGAAAAGCTGTAGATTAAGATGGGTGAACTATTTGAGACCAGACCTTAAGAAGGGTCAGATAACACAACAAGAAGAAAGCATAATCCTAGAGCTTCATGCTAGGTGGGGAAATAGATGGTCAACGATTGCGAGAAGCTTGCCAGGAAGAACAGACAACGAAATAAAGAACTATTGGAGAACTCATTTCAAGAAAAAGACCAAAAAACCATCTGATGCAGCTGAAAAGGCGAAAAATCGTTCTATCAAGAGGCAGCAACAACAATTGAAACAGCAACAGCACCAAATTCAGCAGCAGCAGCAGCAACAACTGCAATACAATTTGGATATGAAAGGGATCATAGACTTGTTGCTTGATGAAAATGACTACCATAGTGTTCCTTCTACTTCTCAAGAGACACAAGAAATGGTTACCATGTATGCAGACACACCAGAACAACAGGGTTACTCTTACTCTATGCTCAATGGTAATGGCAATGGTAATTTTTATGCTCAAGAGTCCTCAAATGAAGACATTTTGTGGGATGGACTTTGGAACATGGATGGTGTTCTTGGAAATTCAATGCAGCCGATGATGCTACAAGCAAAGCCAGCCAATGTGCACAATTTTGTTACTCCCTTTTATTAA 798 0.4073 MYSGVMESNREWSVMEEDRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYLRPDLKKGQITQQEESIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKKPSDAAEKAKNRSIKRQQQQLKQQQHQIQQQQQQQLQYNLDMKGIIDLLLDENDYHSVPSTSQETQEMVTMYADTPEQQGYSYSMLNGNGNGNFYAQESSNEDILWDGLWNMDGVLGNSMQPMMLQAKPANVHNFVTPFY 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01488 265 CDD SANT 24 69 IPR001005 -
Vifa3g01488 265 Coils Coil 132 159 - -
Vifa3g01488 265 Gene3D - 22 74 - -
Vifa3g01488 265 MobiDBLite consensus disorder prediction 125 139 - -
Vifa3g01488 265 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Vifa3g01488 265 Pfam Myb-like DNA-binding domain 75 119 IPR001005 -
Vifa3g01488 265 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 15 221 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vifa3g01488 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Vifa3g01488 265 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Vifa3g01488 265 SUPERFAMILY Homeodomain-like 19 116 IPR009057 -
Vifa3g01488 265 SMART sant 74 122 IPR001005 -
Vifa3g01488 265 SMART sant 21 71 IPR001005 -
Vifa3g01488 265 FunFam Myb transcription factor 22 74 - -
Vifa3g01488 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 124 IPR017930 -
Vifa3g01488 265 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Vifa3g01488 265 CDD SANT 79 120 IPR001005 -
Vifa3g01488 265 FunFam MYB-related transcription factor 79 123 - -
Vifa3g01488 265 Gene3D - 79 123 - -
Vifa3g01488 265 MobiDBLite consensus disorder prediction 121 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01488 Vifa-Chr3 387658613 387659625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01488 17 264 MYB Transcription Factor Family AT3G24310 56.420 1.50e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa3g01488 Myb_DNA-binding 8.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01488 K09422 - gmx:100782089 345.125