Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01481 ATGGAACAAGAAGAGCACGAAGTGTACGGTGCAGACATTCCCGACGAAGAGGTTGAGATGGAAGCTGAGATGGAAGCTGAACAACAAGGAGATGAAGAACTTCCCCCTAATCACACAACCAAGGAATTGGAGGATATGAAGAAGAGGCTGAAAGAGATCGAGGAAGAAGCTAGCGCCCTTCGCGAAATGCAAGCTAAGGTCGAGAAAGAGATGGGCGCTGTTCAAGATCCTGCTGGGTCTTCTGTGTCTCAAGCTGAAAAGGAGGAAGTGGATGCTCGATCAATCTATGTTGGCAATGTCGACTACGCATGTACGCCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACTGTCAACAGAGTTACAATATTGACAGACAAATTTGGTCAACCAAAAGGATTTGCTTATGTAGAATTTGTTGAGATTGATGCTGTTCAAAATGCACTCATTTTAAATGAAACTGAATTGCATGGCCGTCAGCTAAAGGTGTCTGCAAAACGTACAAATGTTCCTGGATTGAAGCAGTACTTTGGAAGAAGACCTGCTGGTTTCCGTGCTAGGAGGCCTTTCATGCCTGCACCATTCTTTCCACCATATGGTTACGGAAGGGTTCCGAGATATAGAAGACCGACGCGATACCGACCATACTAG 654 0.4557 MEQEEHEVYGADIPDEEVEMEAEMEAEQQGDEELPPNHTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEIDAVQNALILNETELHGRQLKVSAKRTNVPGLKQYFGRRPAGFRARRPFMPAPFFPPYGYGRVPRYRRPTRYRPY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01481 217 CDD RRM_II_PABPs 94 165 - -
Vifa3g01481 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 169 IPR000504 GO:0003723
Vifa3g01481 217 SMART rrm1_1 94 165 IPR000504 GO:0003723
Vifa3g01481 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 163 IPR000504 GO:0003723
Vifa3g01481 217 Coils Coil 43 70 - -
Vifa3g01481 217 MobiDBLite consensus disorder prediction 1 44 - -
Vifa3g01481 217 SUPERFAMILY RNA-binding domain, RBD 83 190 IPR035979 GO:0003676
Vifa3g01481 217 MobiDBLite consensus disorder prediction 1 30 - -
Vifa3g01481 217 FunFam Polyadenylate-binding protein 1 87 173 - -
Vifa3g01481 217 Gene3D - 11 173 IPR012677 -
Vifa3g01481 217 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 16 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01481 Vifa-Chr3 387565764 387570861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01481 94 165 Eukaryotic Initiation Factors Gene Family AT2G36660 38.158 5.56e-10 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01481 K14396 - gmx:100527545 310.071