Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01455 ATGAGCCTCTCAATGATCATGAGCAGATTAATCACACAACCTTTAATAAGCAATGTTCCATGCAATGGCAAAAAACTCAACACTCGACAAATTCAAAAAGAGAATGTAGTTTTAGTGATGGGAGCAACAGCCACAGGAAAATCAAAGCTATCAACTGACTTAGCAAACTATTTTCCATCTGAAATAATCAACTCCGACAAAATTCAAATCTACGAAGGTCTCGACATAGTAACAAACAAAATAACAAAAGAAGAACAAAAAGGAATACCTCATCATTTACTAGGAACACATAACCCCAACATAGAATTCACATCAAATGATTTTCGCGAAAAATCAACCTCGGCCATTGACTCAATCACAGGCCGAGGACATCTTCCCATCATCGTCGGAGGCTCGAACTCCTACCTTGAAGCCTTAATCGACGATGATGACTACAACTTTCGATCCAGATACAACTTCTGTTGTCTCTGGGTCGATGTTTCAATGCCTATTCTCCGTGCATACATAGAACAACGCGTCGATCAAATGTTTAACAACGGAATGATCAACGAGCTGCGTCCGTTTTATAACCCGACCGGAGATTATTCAAAAGGAATACGAAAAGCCATTGGTGTACCCGAGTTCGATGAGTATTTTCGAATGGAGAGTTTCGTGGACGAAAAGACTAGAAAAAATTTGCTAGAAAAAGCAAATGTTAAGAGATGGGAGATTCATCGATTAGATGCTACACCTGTTTTTAGGAAGCGTGGAAAAGAAGCTAATGAAACATGGAAGAAGATTGTTGCAGAGCCTAGTGCTATGATTGTGGCAAACTTTTTGTATAACTCTGCTAATGTTGTGAACTCTTCTTCTTCTTCTTCTTCGAGGAATCTTAGAGTGCCAATTTCTCAGAGTGATCTTATGGCTGCTGCTACATGTTAG 921 0.3941 MSLSMIMSRLITQPLISNVPCNGKKLNTRQIQKENVVLVMGATATGKSKLSTDLANYFPSEIINSDKIQIYEGLDIVTNKITKEEQKGIPHHLLGTHNPNIEFTSNDFREKSTSAIDSITGRGHLPIIVGGSNSYLEALIDDDDYNFRSRYNFCCLWVDVSMPILRAYIEQRVDQMFNNGMINELRPFYNPTGDYSKGIRKAIGVPEFDEYFRMESFVDEKTRKNLLEKANVKRWEIHRLDATPVFRKRGKEANETWKKIVAEPSAMIVANFLYNSANVVNSSSSSSSRNLRVPISQSDLMAAATC 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01455 306 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 33 272 IPR039657 -
Vifa3g01455 306 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 145 IPR027417 -
Vifa3g01455 306 Pfam IPP transferase 69 142 - -
Vifa3g01455 306 Pfam IPP transferase 148 226 - -
Vifa3g01455 306 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 224 - -
Vifa3g01455 306 Gene3D - 33 161 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01455 Vifa-Chr3 381878935 381879925 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01455 149 273 C2H2 Transcription Factor Family AT2G27760 26.286 2.13e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01455 K10760 - gmx:100803964 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01455 3 381878935 381879925 Vifa3g01455 3 381878935 381879925 ECH