Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01454 ATGGAAGGAGAAAGTAACAACAACAAAGACAACACTTCAGAGCCAGTCTCGTATGAAAATGAAGATGAAACAAGCAACCATCAAGTCTCTGAGGATCATCAAATTCAAAATCAACAATCTGAAACAAGTGTGGCCCATTGGAATTCTATACCAAAACTACCTTATAGTAACTATGTTGAATATCTCTCTGAATCTTCAACTTATCTTCCAACGACCGAGTATAATTTGGTTGGGAACAATTATCAAACACTTGGTGGCACAACCAGCTTCAATGATCAAGGAAAAGCTTTTGGTTTTAAACCGACTGGTTCTTCAAGTAATGACCATGGTATCATGAAGCGTATTGGGTTTTGGAGAAATAATGAAGAAGAAGAAGATGCAGTTAAAGATGAGGGTGATGCAACATGGCAAACTGATTCAGTTGGAGATAAGCATAGTGCTGCTTCAAGATTTGATCCAATGGGAATGGTTGGTGACGGTTCACCTTTTTTACTTCCAATTCCAAAATCAGGAAGCAGCTCCACAAGACAGAAAAGTGAGAAATCGCGTTGCAGCGACCGTCATCGCAGGCAACGTATCGCTGATAACCTCAAAGCCTTACATGAATTGCTTCCAAATCAAGAAGGGGGTTGTCAAGCCCAAGCTTACATACTGGACGACATCATCGACTATGTTAAATACTTGCAGAATCAACTAAAGGAACTAAGTGGAAGTAAACTGCAAAGTGACTCAAATGCTATACCACTAGTTTATCATGAGGGTTATGGGCATTATATAAAGGATCAAATGCTGAATGAGCCTCTTGAAGAGATAATGGGGAAACTAGTTGAAGAAAATTCAGCAGCAACAAGTCAGCTACTTGAAAGCAAAGGTCTTATTCTACTTCCTATTGCTCTGGTTGAAGAATTGAACCAAGCTATGCAATTGTTGAACCAAGATAGCTAG 945 0.3937 MEGESNNNKDNTSEPVSYENEDETSNHQVSEDHQIQNQQSETSVAHWNSIPKLPYSNYVEYLSESSTYLPTTEYNLVGNNYQTLGGTTSFNDQGKAFGFKPTGSSSNDHGIMKRIGFWRNNEEEEDAVKDEGDATWQTDSVGDKHSAASRFDPMGMVGDGSPFLLPIPKSGSSSTRQKSEKSRCSDRHRRQRIADNLKALHELLPNQEGGCQAQAYILDDIIDYVKYLQNQLKELSGSKLQSDSNAIPLVYHEGYGHYIKDQMLNEPLEEIMGKLVEENSAATSQLLESKGLILLPIALVEELNQAMQLLNQDS 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01454 314 MobiDBLite consensus disorder prediction 1 42 - -
Vifa3g01454 314 CDD bHLH_AtbHLH_like 185 236 IPR045239 -
Vifa3g01454 314 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 299 - -
Vifa3g01454 314 Pfam Helix-loop-helix DNA-binding domain 183 229 IPR011598 GO:0046983
Vifa3g01454 314 MobiDBLite consensus disorder prediction 126 189 - -
Vifa3g01454 314 Gene3D - 170 243 IPR036638 GO:0046983
Vifa3g01454 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 177 228 IPR011598 GO:0046983
Vifa3g01454 314 SMART finulus 183 234 IPR011598 GO:0046983
Vifa3g01454 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 241 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01454 Vifa-Chr3 381382686 381384480 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01454 177 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 37.121 5.07e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g01454 HLH 9.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01454 - - psat:127092327 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01454 3 381382686 381384480 Vifa3g01454 3 381382686 381384480 ECH