Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01436 ATGGCTGCTCCAACTCCATGTCCAGAAGGCGGTTGTAATAAGCTTCAAAACATGTTGCAGGCTGCAGTGCAATCGGTTCAATGGACTTATAGCCTCTTCTGGCAAATTTGTCCACAACAATTGATACTGGTTTGGGGCGATGGATATTACAACGGAGCAATTAAGACGCGTAAGACAGTGCAACCAATGGAGGTTAGTGCAGAAGAAGCTTCTCTACAAAGAAGCCAGCAACTAAGAGAACTCTATGAATCGTTATCGGCCGGAGAGACAAATCCACCAACTCGTCGACCATGTGCTTCTTTGTCGCCGGAAGACTTAACAGAATCAGAATGGTTTTATTTGATGTGTGTCTCTTTCTCATTTCCTCCTGGTGTCGGGTTGCCGGGAAAGGCATATGCTAGGAGGCAGCATGTATGGCTCACGGGTGCAAATGAGGTGGATAGCAAAACATTTTCAAGAGCTATTTTAGCCAAGAGTGCTCATATACAGACTGTGGTATGCATTCCTGTCTTGGACGGTGTCGTTGAGATTGGCACAACTGATAAGGTTCAAGAAGATCTTAATTTCATCAAACATGTGAAGAGTTTCTTCATAGACCACCATTCTTTCCCACCAAAGCCAGCACTCTCCGAACACTCAACCTCCAATCCAACTTACTCAACCGATCACATTCCTGCCATCATGTACACAATGGCAGACCCACCACCCTCCACAACAAATCCCAATCAAGATGACATGGATGAAGACGAAGAAGAAGATGAAGAAGACGATGAAGTTGAAACAGGATCTGAAGATGAAACAGATCAAGATCATAACCAACACGCAAATTCTATAAAAGAGATTGTGGAGCCAAGTGAGCTCATGCAAATTGAAATGCCTGATGATATTCGGATCGGGTCACCCAACGATGGATCCAATAATTTAGACTCAGATTTTCATTTGTTGGCCGTGAGTAACCAAGGAAATCCGACACAAGTTGACTCGTATAGAATCGAGAGATGGGGTCTAATCGAAGAACATGCGGATGATCCACTACAAATTCAATTATCATCTTCAGTGCTTCATCATCCATTAGACTTAACACAAGAAGACACACACTACTCTCAAACAGTAACCACCATTCTCCAAAATCAATGGACCGATTCACCTTCCATCAACTTCATCAACTACTCCACCCAATCCTCTTTCACCAACTGGACCAATCACCACTTCCACGCCCCACCGCCGCCGGACTCCGCCACCTCCCAATGGCTCCTCAAGTACATCCTCTTCACAGTCCCATACCTCCACACCAAAAGCCACGACGAAACCTCTCCACAAACCCGCGACGCCGCCGGAGTCAATGCCGATCCCTCCGCCAGGCTACGCGGCAAGGGAACTCCACAAGACGAACTCAGCGCGAACCATGTCCTCGCCGAGCGACGGAGAAGAGAGAAACTCAACGAGAGGTTCATAATTCTGAGATCACTGGTTCCTTTCGTTACCAAAATGGATAAAGCTTCTATCTTAGGCGACACGATAGAGTATTTGAAACAGCTTCGGAGAAAGATTCAAGATCTCGAGACGCGTAACCGTCAGATGGAATCTGAAATAACTGGCGTAACGGTTTTGGTGGGTCCCACTGAGAAGAAGAAAGTCAGGATAGTTGAAGGGAATGGTGGTGGGGCTGTTAGAGCCAAAGCTGTTGAGGTTGTTGCGTCGGTTCAGGTTTCGATTATAGAGAGTGATGCTTTGTTGGAGATTGAATGTTTGCAGAGAGAAGGACTATTGTTGGATGTCATGATGATGTTGAGGGAGTTGAGAATTGAGGTTATTGGAGTTCAATCGTCGCTTAACAATGGCATTTTCGCCGCGGAGTTGAGGGCTAAGGTTAAGGAGAATGGTAATGGGAAAAAAGTTAGTATTGTTGAAGTTAAGAGAGCGCTTAACCAAATTATACCTCATAATATTTAA 1953 0.4537 MAAPTPCPEGGCNKLQNMLQAAVQSVQWTYSLFWQICPQQLILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKSAHIQTVVCIPVLDGVVEIGTTDKVQEDLNFIKHVKSFFIDHHSFPPKPALSEHSTSNPTYSTDHIPAIMYTMADPPPSTTNPNQDDMDEDEEEDEEDDEVETGSEDETDQDHNQHANSIKEIVEPSELMQIEMPDDIRIGSPNDGSNNLDSDFHLLAVSNQGNPTQVDSYRIERWGLIEEHADDPLQIQLSSSVLHHPLDLTQEDTHYSQTVTTILQNQWTDSPSINFINYSTQSSFTNWTNHHFHAPPPPDSATSQWLLKYILFTVPYLHTKSHDETSPQTRDAAGVNADPSARLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQMESEITGVTVLVGPTEKKKVRIVEGNGGGAVRAKAVEVVASVQVSIIESDALLEIECLQREGLLLDVMMMLRELRIEVIGVQSSLNNGIFAAELRAKVKENGNGKKVSIVEVKRALNQIIPHNI 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01436 650 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 466 535 IPR036638 GO:0046983
Vifa3g01436 650 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 464 513 IPR011598 GO:0046983
Vifa3g01436 650 MobiDBLite consensus disorder prediction 243 265 - -
Vifa3g01436 650 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 15 197 IPR025610 -
Vifa3g01436 650 MobiDBLite consensus disorder prediction 228 285 - -
Vifa3g01436 650 MobiDBLite consensus disorder prediction 433 467 - -
Vifa3g01436 650 SMART finulus 470 519 IPR011598 GO:0046983
Vifa3g01436 650 PANTHER TRANSCRIPTION FACTOR TT8 13 648 - -
Vifa3g01436 650 Coils Coil 503 530 - -
Vifa3g01436 650 Gene3D - 465 535 IPR036638 GO:0046983
Vifa3g01436 650 Pfam Helix-loop-helix DNA-binding domain 467 514 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01436 Vifa-Chr3 374810694 374822525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01436 297 649 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 38.122 3.45e-56 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g01436 bHLH-MYC_N 1.9e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01436 - - cam:101506726 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g03225 5 1069359253 1069363613 Vifa3g01436 3 374810694 374822525 PCT