Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01421 ATGAGGTTGAGATCTAGGACTCGGTCAGGGAAGGTTTCTGGTGAAGGAAAGGTTGTTCAGAAGGAAAGGGTTTGTGTGAGGAATGCTAGTGATAGTTTGGTTTCGTGTGATGAGGGTTTTGAGGCTTCTACCTCGTTGGTTGAGAAGAAAGACGAGGATTTAGTTTCAGAGGATACGGGTTTAGAGGCACCTACCTTTTTGGTTGAGAAGAAAGAAGAGGCATTAGTTTCCGCGGAAGAGGGTTTAGAGGCACCTACCTTTTTGGTTGAGAAGAAAGAAGAGGCATTAGTTTCCGCGGATGAGGGTTTAGAGGCACCTACCTTGTTGATTGAGAAGAAAAACGAGGATTTAGAGCCCCCTACTATGTTGATTGAGAAGAAAGACAAGGTTGAATGTGCTGGTGAAGTTGACAGTGCTGGCGAAGTTGAATGTGCTGTGAAAAAAAAATTTGACTTGGATTTAAATGCGAGTCCAAGTGAAAATATTGACTTAGCTGAGAATGAGAGCTGTTTGGATTTAAATGTTAACATGAGTGGAAATGTTGACTTAGCTGAGAATGGGAACAGTAGCCCTAGGAGTTGTTTAAAAGATGGTGATAGTAATGTAGAAGCTGAGGTTGTTATGGAGGAGAATGAAGAGTTGAGTGGGGCTCGAGTACTGCGGTCAAGGTCAAAGTGGGGAGATGACAAAAAATCTGATGATGGAGGGAATGAGGTTGCTGAGAATAATGGAGAACCTGGTGGGTTTGATGAGGTTAAAGAAGCTGTTGGGGTTCTTACTGATGGTAACGAGAATGAAAGAGTTAAGGTGAAAATGGGAGGGAAGGGCAAGAGGAAATTGAAACGGAAGCGTGGGAGGCCTCCGAAAACGGAGATAAAAGAGAAAGATGACTTAGTTGACCAGCCACCGCGTAAGAAAACAGAGATGAAAGAGAAAGATGACTTAGTTGACCAGCCACCGCGTAAGGTTGGGAGGCCTCCAAAAACCGAGATAAAAGAGAGAGGTGAATTAGTTGATCGACCACCACGTAGGGTTGGGAGGCCTCCAAAAACAGAGATAAAAGAGAAAGATGAATTAGTTGATCAGCCACCGCGTAGGGTTGGGAGGCCTCCGAAAACAGAGATAAAAGAGAAAGGTCAATTAGTTGATCAGCCACTGAGTAAGCTTGGGAGGCCTCTCAAAGAAGTTATAAAAGAGGATGATCAGTTAGTTCAGTCAACGCGTAAGCGTGGAAGACCTCCCAAGACCGACCGACAAAAGTATCCCATGACTGTGTCACATAATAGGAAAGGAAAGGCCAGCCATGAAAATGGGAAAAAAGTTACCAGTAAACAGTTTAAAAAGAAGAGGACATCAAATACTGTGAATGAACCTGCGGCTAACCGAATTAAAAGACGTGAACAAAAGCAGTTGGTGAGTAATCAAATAATGGAATGTCTCTCGGATGCAGGATGGACTGTTGACCATAGACCTAGAAACGGGAGAGATTATATTGATGCAGTATATGTTGCCCTGGATGGAAAAACACATTGGTCAATAACCTTGGCGTACAAGAGGCTTAAAGAGCATTATGAAGCGGGGAATGGTGAAGGTAAGTTGTACAGACCAGGATTCAAATTTACACCAATACCCGAGGAAGATTTCAATTTACTGACTAGAATTGTTACCAAGAAAAGATGTTCGAAGAATGGAAAGAATGTTGATGGGGTCAGTCGAAAAGAGAAAAAAATAAAACCAGGTTCTGGTGCAGGCAAGGGTAAGTCAGTGAAAGGGAAAAGGAAAAGGAAACGATCACTTGCCGAGGATGGCGATACAGATTTTAAATCACCTAACAGGCTGTCGGTTCTGGCCAGGGATCGTAAGCGGCACAAAACTCAGAACAAGACACGAGGTGCTCTGTTGGTCCGTGATGCTACGGAAGAGGTAGATTCAAAAATTAACGGATATGTGCCATACAGTGGAAAACGAACTGTACTTGCCTGGATGATTGATTTGGGCACAATCCTTCAAAATGGGAAGGTCCATTATATGCAAGACAAGTTGGAAATTGCTCCACTGGAAGGTAGTATCACAGGAGATGGTATTCACTGTGGCTGCTGTAATTCAATCATAACAGTTTCAGACTTTGGAGTTCATGCAAGAAGCAAACAATCTGATCCTCTTAAAAGTATATATACGGAGGATGGAACTTCACTCCTACAGTGCCTGCTAGATTCGTGGAATAAACAAGATGAATCTGAACGTAGAAGTTTTCATTTTGTTGATGTTGCGGGTGAAGATCCTAATGATGATACATGTGGTATCTGCGGAGATGGTGGAGACCTGATGTGCTGTGATGGTTGCCCATCAACCTTCCATAAAAGCTGCTTGGATATAAAAAAGTTTCCATCTGGTGACTGGCACTGCATTTACTGTTGTTGCAAATTTTGTGGGTTGGTTGGTGGATGTTCAAACCAAAGTGTTGTCAATGACGAGTTTACTATGCGTGCATTGCTCACATGCCATTTATGTGAGGAAAAATTTCACAAATCTTGTATTGAGGCAAATGGTGGTAAGACTGATGATTCCGGGGATGCATTATTTTGCGGAAACAAATGTCAAGAGTTATCCGAGGGACTTGAAAGGCTTCTTGGGGTTAAACATGAAATCGAAGATGGGTTTTCTTGGTCTTTTATTTGGCGATCAGATGTTGCCTTTGATGCTTCTCTGACAAAACCTCAGCTGGTAGAATGTAATTCTAAGCTGGCTGTTGCATTATCAATAATGAATGAGTGCTTCATGCCATTTATTGATCATAGAAGTGGGACCAATCTGATCCACAGTATTGTATACAACTGTGGGTCAAACTTCAAACGCCTGAACTATAGTGGATTTATTACTGCAATTCTAGAGAGAGGTGATGAGATCATATGTGTTGCATCTATCAGGATCCATGGGAACCAACTTGCAGAGATGCCATTCATCGGAACCCGCTATATGTATAGGCGACAAGGAATGTGCCGTCGGCTTCTAAATGCCATAGAATGGGCGCTCAATTCTTTACATGTTGAGTTATTAGTCATACCAGCTATATCAGAACTCAAAGAAACCTGGACCTCTGTTTTTGGGTTTGAGCCACTTGATCAAACAAGCAAGCAAATATCAAAGAACATGAATCTGTTGGTGTTTCCTCACGTAGATATGCTACAGAAGAAGATATCAAAGCATGAATTTACTAATGAAAATTTGATTCCTACTGAAGTTTCCAATCATCAGAAGAATCACACTACACCCAAGGTAGCAAAACGGGACGGGGAAGACTCAACTGGATCTGATTGTTGCAAGAAAATTGATAACTCATTGAATAACACACCTGATGTTACTAACGACAGCATACAGAATAATAAATCTCCAAAAGATGGCACATGTCAAGTTGTATGTCAGATTGGACATTACGATGGTGCATTGTTGGAGGTTACTGAAAATTGTCCAAACAAGGTCAAAGTAACAACTGAGGTTGGTTTAAATAACATCGGTGCTGAAAAATCTACACTCTCTGGGGCAGAAAATATTCCTTTTGACTCACAAGTTGTGTTCAGGACAAGGGAATCAAAATATTCTGCTGACAGTAACCATGATTCACACAAGATTTTTGGCAGCTGTGAACTGAGATTTAAGACCGACTGTGCTCAACCTGGCAGTATTGGATCAGAAGAAGCATATACTCAATTTGACAATGTTTGTAGCACTCATTCTGTACCAGATGGTGATAGTGCCGCCGGCGTAGCAAGTCTCCCAACAAACATCTTGATGAACATTGAATCACAGAATATTACCCAAGATTTGCCTGTTAGTTGTGAAAGCAATTCAAGTGTTGTTAGTGTGCCAATTGCTAATGAAGCAGAAGTATGTTATTCCAAGACCATTGATCTCCAAACAAACAAAAGTCCTGGAGATTCTCAATCCATACTATTATTATCTTCAGGTATTTGTGAGAAAATTGCTGATGGAGTCAGTGAGACGAATAAAGCATCCAGTGAAGCTGATACCGGTTTTCTTCCTGCTGATATTGATGTAATACTTGATGATAAACCTGGTTCTCATTCTAGATCCAATGGTCGTAGTGTCTCTGACGAAGCAGGTCTCACAACCAATGTTTTGATGCATCTTGAATCACAGAATATTACCAAACATTTTCCTGTTAATTGTGAAGAGAATTCCAAAACAATTGATCTCCAGACAAACAAAATTCCTGGAGATTGTCAATCCATACTAGAATCTTCAGGTGTTTGTGAGAAAATTGCAGATGGTGTCAGTAAGAGGAATAAAGCACCCAGTGCAGCTGATGCCAATGCTCTTCCAATTCATCTTGAAGTAGTTCCCAATAACATACCTGACATAAAGGAGTCTTCGGAGCCAGCAGAGCCTGATTTGCAGGTTGATCAAACTGAACAGAGTGAAACTAACACTGCTTCAGTTGCGGCTCTGCACTGTACCTCTGCTGGCAGTACTTCATGTGGTAGTGCTGACGGCTTAGTTCTGTAA 4524 0.4162 MRLRSRTRSGKVSGEGKVVQKERVCVRNASDSLVSCDEGFEASTSLVEKKDEDLVSEDTGLEAPTFLVEKKEEALVSAEEGLEAPTFLVEKKEEALVSADEGLEAPTLLIEKKNEDLEPPTMLIEKKDKVECAGEVDSAGEVECAVKKKFDLDLNASPSENIDLAENESCLDLNVNMSGNVDLAENGNSSPRSCLKDGDSNVEAEVVMEENEELSGARVLRSRSKWGDDKKSDDGGNEVAENNGEPGGFDEVKEAVGVLTDGNENERVKVKMGGKGKRKLKRKRGRPPKTEIKEKDDLVDQPPRKKTEMKEKDDLVDQPPRKVGRPPKTEIKERGELVDRPPRRVGRPPKTEIKEKDELVDQPPRRVGRPPKTEIKEKGQLVDQPLSKLGRPLKEVIKEDDQLVQSTRKRGRPPKTDRQKYPMTVSHNRKGKASHENGKKVTSKQFKKKRTSNTVNEPAANRIKRREQKQLVSNQIMECLSDAGWTVDHRPRNGRDYIDAVYVALDGKTHWSITLAYKRLKEHYEAGNGEGKLYRPGFKFTPIPEEDFNLLTRIVTKKRCSKNGKNVDGVSRKEKKIKPGSGAGKGKSVKGKRKRKRSLAEDGDTDFKSPNRLSVLARDRKRHKTQNKTRGALLVRDATEEVDSKINGYVPYSGKRTVLAWMIDLGTILQNGKVHYMQDKLEIAPLEGSITGDGIHCGCCNSIITVSDFGVHARSKQSDPLKSIYTEDGTSLLQCLLDSWNKQDESERRSFHFVDVAGEDPNDDTCGICGDGGDLMCCDGCPSTFHKSCLDIKKFPSGDWHCIYCCCKFCGLVGGCSNQSVVNDEFTMRALLTCHLCEEKFHKSCIEANGGKTDDSGDALFCGNKCQELSEGLERLLGVKHEIEDGFSWSFIWRSDVAFDASLTKPQLVECNSKLAVALSIMNECFMPFIDHRSGTNLIHSIVYNCGSNFKRLNYSGFITAILERGDEIICVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALNSLHVELLVIPAISELKETWTSVFGFEPLDQTSKQISKNMNLLVFPHVDMLQKKISKHEFTNENLIPTEVSNHQKNHTTPKVAKRDGEDSTGSDCCKKIDNSLNNTPDVTNDSIQNNKSPKDGTCQVVCQIGHYDGALLEVTENCPNKVKVTTEVGLNNIGAEKSTLSGAENIPFDSQVVFRTRESKYSADSNHDSHKIFGSCELRFKTDCAQPGSIGSEEAYTQFDNVCSTHSVPDGDSAAGVASLPTNILMNIESQNITQDLPVSCESNSSVVSVPIANEAEVCYSKTIDLQTNKSPGDSQSILLLSSGICEKIADGVSETNKASSEADTGFLPADIDVILDDKPGSHSRSNGRSVSDEAGLTTNVLMHLESQNITKHFPVNCEENSKTIDLQTNKIPGDCQSILESSGVCEKIADGVSKRNKAPSAADANALPIHLEVVPNNIPDIKESSEPAEPDLQVDQTEQSETNTASVAALHCTSAGSTSCGSADGLVL 1507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01421 1507 PRINTS AT-hook-like domain signature 318 329 IPR017956 GO:0003677
Vifa3g01421 1507 PRINTS AT-hook-like domain signature 405 415 IPR017956 GO:0003677
Vifa3g01421 1507 PRINTS AT-hook-like domain signature 281 291 IPR017956 GO:0003677
Vifa3g01421 1507 CDD PHD1_AIRE 766 805 - -
Vifa3g01421 1507 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 906 1066 IPR000182 GO:0016747
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 211 238 - -
Vifa3g01421 1507 PANTHER PHD FINGER PROTEIN 12 433 1132 IPR042163 GO:0003714|GO:0045892
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 181 200 - -
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 595 616 - -
Vifa3g01421 1507 SMART PHD_3 765 806 IPR001965 -
Vifa3g01421 1507 SMART PHD_3 807 867 IPR001965 -
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 287 381 - -
Vifa3g01421 1507 SUPERFAMILY FYVE/PHD zinc finger 754 807 IPR011011 -
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 562 581 - -
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 209 460 - -
Vifa3g01421 1507 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 755 828 IPR013083 -
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 1084 1107 - -
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 1458 1481 - -
Vifa3g01421 1507 Pfam Tify domain binding domain 688 737 IPR032308 -
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 272 286 - -
Vifa3g01421 1507 ProSiteProfiles Zinc finger PHD-type profile. 763 808 IPR019787 -
Vifa3g01421 1507 SMART AT_hook_2 407 419 IPR017956 GO:0003677
Vifa3g01421 1507 SMART AT_hook_2 320 332 IPR017956 GO:0003677
Vifa3g01421 1507 SMART AT_hook_2 364 376 IPR017956 GO:0003677
Vifa3g01421 1507 SMART AT_hook_2 281 293 IPR017956 GO:0003677
Vifa3g01421 1507 SMART AT_hook_2 342 354 IPR017956 GO:0003677
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 1090 1106 - -
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 181 196 - -
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 562 628 - -
Vifa3g01421 1507 Pfam AT hook motif 320 329 IPR017956 GO:0003677
Vifa3g01421 1507 Pfam AT hook motif 407 416 IPR017956 GO:0003677
Vifa3g01421 1507 Pfam AT hook motif 364 373 IPR017956 GO:0003677
Vifa3g01421 1507 Pfam AT hook motif 342 351 IPR017956 GO:0003677
Vifa3g01421 1507 Pfam AT hook motif 281 290 IPR017956 GO:0003677
Vifa3g01421 1507 MobiDBLite consensus disorder prediction 392 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01421 Vifa-Chr3 371069614 371079053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01421 238 1073 PHD Transcription Factor Family AT5G36670 40.023 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01421 - - tpra:123913713 1788.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01421 3 371069614 371079053 Vifa3g01421 3 371069614 371079053 ECH