Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01420 ATGAGAAATCTGAACATCTGCTTTTCAGATTCAAGTCTATCAAAATCTCCACCTACAAGTCCCACTGCTACTACGACTACTAGTGCAACTTCCTCACATCAAGATCATCATGAAATTCATCATAAACCTTCTTCATCGACATCTTCCACATCATTTATGATCAAGAACTTCAACTCTCTCTACGACCCTTCATTGACCTCCGACCATACTTCTTCACTCTCTACCACTTTCACCACATCCACATCATTCAATCTCGATGTCGAGCCCGAACCCGAACTCAAACCAGTTGACTTTGCAGCTGCCTTCGCCTCTCAACGCTTCTTCTTCTCTTCTCCCGGAAGTTCGAACTCGCTAATTGAATACACAAACACAAATTGCAAGTCCAATAGTACTGAGCGTGAGCGTGAGCGTGAGAAGAAGAAGAATAACAGAAAGGAAGAGAAAGAGAAGGTTTTGTTCAACGGAAGCGTGGCTGTACCAACCTATTCTCCTGATCCTTATACGGATTTCAGGAGATCGATGCAAGAGATGGTGGAGGCTCACCCCGAGTTGATGGATGTGAAATCAAATTGGAACATCTTGCATGAATTGCTTCTTTGTTACCTTGCTCTCAACCCAAAAAATACACACAAGTTCATTCTAGGTGCTTTCGCCGATCTTCTCGTTACTCTCATATCATTGTAA 684 0.4284 MRNLNICFSDSSLSKSPPTSPTATTTTSATSSHQDHHEIHHKPSSSTSSTSFMIKNFNSLYDPSLTSDHTSSLSTTFTTSTSFNLDVEPEPELKPVDFAAAFASQRFFFSSPGSSNSLIEYTNTNCKSNSTEREREREKKKNNRKEEKEKVLFNGSVAVPTYSPDPYTDFRRSMQEMVEAHPELMDVKSNWNILHELLLCYLALNPKNTHKFILGAFADLLVTLISL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01420 227 Pfam Transcriptional repressor, ovate 163 224 IPR006458 -
Vifa3g01420 227 Coils Coil 128 150 - -
Vifa3g01420 227 MobiDBLite consensus disorder prediction 1 49 - -
Vifa3g01420 227 MobiDBLite consensus disorder prediction 129 147 - -
Vifa3g01420 227 NCBIfam uncharacterized plant-specific domain TIGR01568 157 225 IPR006458 -
Vifa3g01420 227 MobiDBLite consensus disorder prediction 1 32 - -
Vifa3g01420 227 MobiDBLite consensus disorder prediction 120 147 - -
Vifa3g01420 227 ProSiteProfiles OVATE domain profile. 159 223 IPR006458 -
Vifa3g01420 227 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 38 224 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01420 Vifa-Chr3 370250542 370251225 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vifa3g01420 Ovate 8.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01420 - - aprc:113871147 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01420 3 370250542 370251225 Vifa3g01420 3 370250542 370251225 ECH