Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01404 ATGGGTAACGTAGACTATGATTACCCTCATTCAGGTATGAACATGAACAACGTTGGTGAGAACCATGTTAAACATCGTGTAGACATTCCACCTCCACAACCATTTTTGAAGTCTATGAAACATGCAATGAAAGAGACTTTCTTTCCAGATGATCCATTGAGAAAGTTTAAGAATCAACCAGCTTCCAAAAAGTTGGTGCTTGGTTTTCAATATTTATTTCCAATATTTGAATGGGCACCAAACTACACTTTTCAGTTCCTGAAATCTGATATCATAGCTGGAATTACTATTGCTAGTTTGGCTATTCCTCAGGGAATTAGCTATGCCAAACTTGCCAACCTCCCTCCAATTCTTGGATTATATTCGAGCTTTATTCCGCCATTGATTTATTCTATGATGGGGAGTTCAAGGGATTTGGCAGTTGGGACAGTGGCAGTTGGATCTCTTCTGATGGGTTCCATGTTAGCCACTGAAGTTAATCCAAACCAAAATCCAAGTCTTTATCTCCACCTTGCTTTCACAGCAACATTCTTTGCCGGTGTTTTGCAAGCTTCGTTGGGCTTCTTTAGGTTAGGGTTTATCGTGGATTTTCTGTCGCATGCAGCGATTGTAGGGTTCATGAGCGGAGCAGCCACGGTGGTTTGTCTGCAGCAACTCAAACCAATGCTAGGTCTTGAACATTTCACCCATGGTGCTGATCTCATATCAGTTATGCGTTCTGTTTTTACGCAAGTTCATCAATGGAGGTGGGAAAGCGCTGTTTTGGGATGTGTCTTCATCTTCTTTCTCCTTATCACAAGATACTTTAGTAAAAAACAACCCAAATTCTTTTGGGTGTCTGCAATGACGCCGTTAGCGTCCGTTATTCTCGGAAGTTTGCTGGTCTATTTCACCCATGCAGAGAATCACGGCGTTCAAGTGATTGGAGAATTGAAGAAAGGACTAAACCCAATCTCAATCACAGAACTGGTATTCGTGTCTCCTTATAGGACCACATCTATCAAAACCGGACTTATTGTTGGCATCATAGCTCTTGCGGAAGGAATAGCTGTGGGAAGAAGCTTTGCAATGTTTAAAAATTACCATATAGATGGAAACAAAGAGATGATAGCTATTGGAACTATGAACATAGTTGGTTCTTTCACCTCTTGCTACCTCACAACAGGACCATTTTCGCGTTCGGCCGTGAACTATAACGCTGGATGCAAAACAGCAGCATCAAACATTGTGATGGCAATTGCTGTCATGTTGACACTGTTGTTCTTAACACCTTTGTTCTACTACACTCCTCTGGTCGTACTAGCAGCCATAATTGTATCTGCAATGCTTGGACTTATAGATTATCAAGCAGCCATCCATTTGTGGAAGATTGACAAATTCGACTTTGTCGTCTGCGTTAGCGCATATTTCGGTGTTGTCTTTGGCAGTGTTCAAATGGGCTTAGTCATAGCAATTGTCATATCAGTACTTCGGTTACTGCTATTTATTGCACGGCCAAGAACATCTGTTTTAGGAAACCTTCCAAATTCAGCAATATACCGAAACATTGAGCATTATCCAAATGCAAATCGTGTCTCCGGAATTCTAATTCTAAAGATTGACGCACCAATATACTTTGCCAATGCAAGCTATTTAAGAGAAAGGATCTCAAGATGGATTGATGAAGAGGAAGACAGAATTAAAGCTACAGGGGAGACAAGTTTGAAGTATATTATATTGGATATGAGTGCTGTTGGGAATATTGATACAAGTGGAATAAGTATGCTTGAAGAGATTAACAAGATTTCTGAAAGAAGAGAGCAGCAACTTGTTTTGGTGAACCCTGGAAGCGAGGTGATGAAGAAACTAAACAAATCCAAATTTCAGAAGGATATGGGTGGAAATTGGATCTATCTGACAGTAGAAGAGGCTGTTAGAGCTTGTAACTTTGTGCTCCATCCATGCAAAACGAATCCCAAAAAAGATGAATCAGAGGGTTGGAACAATGTCTGA 1992 0.4061 MGNVDYDYPHSGMNMNNVGENHVKHRVDIPPPQPFLKSMKHAMKETFFPDDPLRKFKNQPASKKLVLGFQYLFPIFEWAPNYTFQFLKSDIIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYSMMGSSRDLAVGTVAVGSLLMGSMLATEVNPNQNPSLYLHLAFTATFFAGVLQASLGFFRLGFIVDFLSHAAIVGFMSGAATVVCLQQLKPMLGLEHFTHGADLISVMRSVFTQVHQWRWESAVLGCVFIFFLLITRYFSKKQPKFFWVSAMTPLASVILGSLLVYFTHAENHGVQVIGELKKGLNPISITELVFVSPYRTTSIKTGLIVGIIALAEGIAVGRSFAMFKNYHIDGNKEMIAIGTMNIVGSFTSCYLTTGPFSRSAVNYNAGCKTAASNIVMAIAVMLTLLFLTPLFYYTPLVVLAAIIVSAMLGLIDYQAAIHLWKIDKFDFVVCVSAYFGVVFGSVQMGLVIAIVISVLRLLLFIARPRTSVLGNLPNSAIYRNIEHYPNANRVSGILILKIDAPIYFANASYLRERISRWIDEEEDRIKATGETSLKYIILDMSAVGNIDTSGISMLEEINKISERREQQLVLVNPGSEVMKKLNKSKFQKDMGGNWIYLTVEEAVRACNFVLHPCKTNPKKDESEGWNNV 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01404 663 PANTHER SULFATE TRANSPORTER 36 643 IPR001902 GO:0016020|GO:0055085
Vifa3g01404 663 ProSitePatterns SLC26A transporters signature. 116 137 IPR018045 GO:0008271|GO:0008272
Vifa3g01404 663 Pfam STAS domain 519 637 IPR002645 -
Vifa3g01404 663 CDD STAS_SulP_like_sulfate_transporter 519 634 - -
Vifa3g01404 663 Pfam Sulfate permease family 87 467 IPR011547 GO:0016020
Vifa3g01404 663 SUPERFAMILY SpoIIaa-like 521 641 IPR036513 -
Vifa3g01404 663 Gene3D STAS domain 498 643 IPR036513 -
Vifa3g01404 663 ProSiteProfiles STAS domain profile. 518 641 IPR002645 -
Vifa3g01404 663 FunFam Sulfate transporter 31 498 644 - -
Vifa3g01404 663 NCBIfam sulfate permease 74 637 IPR001902 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01404 Vifa-Chr3 366849309 366853667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01404 25 663 Inorganic Solute Cotransporters AT4G02700 67.969 0.0 903
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01404 K17471 - gmx:100810196 1102.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01404 3 366849309 366853667 Vifa3g01404 3 366849309 366853667 ECH