LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g01403	ATGGAACAGTATGAACATGAAAACAAAAGGTATGTGCTCAAGAAGATCCGCCTTGCCCGCCAGACCGAAAGAATCCGTAGATCTGCTCACCAGGAGATGGAGCTTATATCGAAAGTTCGTAATCCATTTATTGTAGAGTATAAAGATTCATGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGTTATTGTGAAGGAGGAGATATGGCTGAAGCTATTAAAAAGGCTAAGTGTGTTCATTTTTCTGAAGAGAGGCTTTGCAAGTGGCTTGTTCAGCTCTTGATGGCACTTGATTACTTGCACACAAATCATATTCTACACCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTAATGTGACTTCGGTCTTGCTAAAATGTTGGACAAGTGATGATCTTGCTTCTTCGATTGTGGGGACTCCGAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGATCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCTCACAAACCCGCTTTTAAAGCTCTTGATATGCAAGCACTAATTAACAAAATAAACAAGTCTTTAGTATCCCCACTACCAACAGTTTATTCGGGTACTTTTCGAGGCATGGTGAAGAGTATGCTACGGAAAAATCCCGAGCTTAGGCCAAGTGCTGCAGAACTACTAAATCATCCACATCTTCAACCTTATATACTTAAAGTTCATTTGAAACTAAACAACCCCAGAAGAAGTACTTTTCCATTCCAATGGACTGACTCAAACCATGCTAGGAGAAGTCGATTTGTAGAGCCAGAATCTGCTTCCACTCTCTCTGGCAGAGTTAAACGTTTGTCGTTCAGTAACGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTCTGTGTTCTACTCAAAGAGCTCAAGGATTCTCTACTTATTCAAAACATTATGAGCTATCCATTGGCTGTGTCCGTGAAAAACGCAATGCTAACAAATCAAAAGACACCAAGTTTTCAAATGTTGGTCGTGTGGAAAGACTGGGAGCAGCTAAGGAGTCTGCCACCCCCCGACGACAGATTACCCCATCAAAGATAGCCCGTACTAGTTCCAAGCGCGATTCACTTCCATCATCTTCTACTCCAGCTGGTAAATTTACCCCACCGTCTCGCAGAGCTTCACTTCCATTGCCTACAAGATCCACAGCCACGACCACTCCTTACAGAGCCAATGCCGATCTTCTTCGAAATGTGGACTCTCCTAATATCTCTGTGAATGCGCCACGAATTGACAAGATTGCCGAATTCTCGTTGGCCCCTGGTGAGGATCATCCTCTCTTTCCTGTGCCTGGGATATCATCAACATCAGCTCAGTGCTCTTCTAGTTCCCCAAGGAGTGCTGCTGACTACACAATCACAAAAGACAAATGTACAATCCAGATCGTGGACAAAGCCAATGTCCGTACCAGCGGTGCTCTAGTTTCATGTGGCAATGAATGCTCTGAACATGTCACAACTGCTGTTTCAAGCAATTCATCGGCCGATTCTCGTCAACATAAGTTTGACACCTCGTCTTACGAGCAACGAGCGGAGGCATTGGAAGGGTTGCTCGAGTTCAGTGCCAGGCTTCTACAACAGCAGAGGTTTGAAGAGCTCGAGGTTTTGTTGAAGCCATTCGGGCCGGAGAAGGTTTCTCCAAGGGAAACAGCCATTTGGTTGACTAAGAGCTTTAAAGAAACTGTGGTCTAA	1776	0.4386	MEQYEHENKRYVLKKIRLARQTERIRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKAKCVHFSEERLCKWLVQLLMALDYLHTNHILHRDVKCSNIFLTKDQDIRLGNVTSVLLKCWTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVSPLPTVYSGTFRGMVKSMLRKNPELRPSAAELLNHPHLQPYILKVHLKLNNPRRSTFPFQWTDSNHARRSRFVEPESASTLSGRVKRLSFSNDRALNPSISGTEVGSLCSTQRAQGFSTYSKHYELSIGCVREKRNANKSKDTKFSNVGRVERLGAAKESATPRRQITPSKIARTSSKRDSLPSSSTPAGKFTPPSRRASLPLPTRSTATTTPYRANADLLRNVDSPNISVNAPRIDKIAEFSLAPGEDHPLFPVPGISSTSAQCSSSSPRSAADYTITKDKCTIQIVDKANVRTSGALVSCGNECSEHVTTAVSSNSSADSRQHKFDTSSYEQRAEALEGLLEFSARLLQQQRFEELEVLLKPFGPEKVSPRETAIWLTKSFKETVV	591

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa3g01403	591	Gene3D	Transferase(Phosphotransferase) domain 1	65	256	-	-
Vifa3g01403	591	SUPERFAMILY	Protein kinase-like (PK-like)	6	297	IPR011009	-
Vifa3g01403	591	MobiDBLite	consensus disorder prediction	366	396	-	-
Vifa3g01403	591	ProSiteProfiles	Protein kinase domain profile.	1	241	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vifa3g01403	591	Pfam	Protein kinase domain	6	240	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Vifa3g01403	591	Gene3D	Phosphorylase Kinase; domain 1	2	64	-	-
Vifa3g01403	591	Coils	Coil	1	21	-	-
Vifa3g01403	591	MobiDBLite	consensus disorder prediction	341	414	-	-
Vifa3g01403	591	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	106	118	IPR008271	GO:0004672\|GO:0006468
Vifa3g01403	591	PANTHER	SERINE/THREONINE-PROTEIN KINASE NEK	8	547	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g01403	Vifa-Chr3	365708491	365712047	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g01403	30	242	MAP Kinase Kinase Kinase	AT1G53570	31.628	4.01e-28	116

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NEK	Vifa3g01403		Pkinase	3e-48	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g01403	K08857		-	gmx:100810347	918.302

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