Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01403 ATGGAACAGTATGAACATGAAAACAAAAGGTATGTGCTCAAGAAGATCCGCCTTGCCCGCCAGACCGAAAGAATCCGTAGATCTGCTCACCAGGAGATGGAGCTTATATCGAAAGTTCGTAATCCATTTATTGTAGAGTATAAAGATTCATGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGTTATTGTGAAGGAGGAGATATGGCTGAAGCTATTAAAAAGGCTAAGTGTGTTCATTTTTCTGAAGAGAGGCTTTGCAAGTGGCTTGTTCAGCTCTTGATGGCACTTGATTACTTGCACACAAATCATATTCTACACCGCGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTAATGTGACTTCGGTCTTGCTAAAATGTTGGACAAGTGATGATCTTGCTTCTTCGATTGTGGGGACTCCGAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCCTATGGATCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCTCACAAACCCGCTTTTAAAGCTCTTGATATGCAAGCACTAATTAACAAAATAAACAAGTCTTTAGTATCCCCACTACCAACAGTTTATTCGGGTACTTTTCGAGGCATGGTGAAGAGTATGCTACGGAAAAATCCCGAGCTTAGGCCAAGTGCTGCAGAACTACTAAATCATCCACATCTTCAACCTTATATACTTAAAGTTCATTTGAAACTAAACAACCCCAGAAGAAGTACTTTTCCATTCCAATGGACTGACTCAAACCATGCTAGGAGAAGTCGATTTGTAGAGCCAGAATCTGCTTCCACTCTCTCTGGCAGAGTTAAACGTTTGTCGTTCAGTAACGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTCTGTGTTCTACTCAAAGAGCTCAAGGATTCTCTACTTATTCAAAACATTATGAGCTATCCATTGGCTGTGTCCGTGAAAAACGCAATGCTAACAAATCAAAAGACACCAAGTTTTCAAATGTTGGTCGTGTGGAAAGACTGGGAGCAGCTAAGGAGTCTGCCACCCCCCGACGACAGATTACCCCATCAAAGATAGCCCGTACTAGTTCCAAGCGCGATTCACTTCCATCATCTTCTACTCCAGCTGGTAAATTTACCCCACCGTCTCGCAGAGCTTCACTTCCATTGCCTACAAGATCCACAGCCACGACCACTCCTTACAGAGCCAATGCCGATCTTCTTCGAAATGTGGACTCTCCTAATATCTCTGTGAATGCGCCACGAATTGACAAGATTGCCGAATTCTCGTTGGCCCCTGGTGAGGATCATCCTCTCTTTCCTGTGCCTGGGATATCATCAACATCAGCTCAGTGCTCTTCTAGTTCCCCAAGGAGTGCTGCTGACTACACAATCACAAAAGACAAATGTACAATCCAGATCGTGGACAAAGCCAATGTCCGTACCAGCGGTGCTCTAGTTTCATGTGGCAATGAATGCTCTGAACATGTCACAACTGCTGTTTCAAGCAATTCATCGGCCGATTCTCGTCAACATAAGTTTGACACCTCGTCTTACGAGCAACGAGCGGAGGCATTGGAAGGGTTGCTCGAGTTCAGTGCCAGGCTTCTACAACAGCAGAGGTTTGAAGAGCTCGAGGTTTTGTTGAAGCCATTCGGGCCGGAGAAGGTTTCTCCAAGGGAAACAGCCATTTGGTTGACTAAGAGCTTTAAAGAAACTGTGGTCTAA 1776 0.4386 MEQYEHENKRYVLKKIRLARQTERIRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKAKCVHFSEERLCKWLVQLLMALDYLHTNHILHRDVKCSNIFLTKDQDIRLGNVTSVLLKCWTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVSPLPTVYSGTFRGMVKSMLRKNPELRPSAAELLNHPHLQPYILKVHLKLNNPRRSTFPFQWTDSNHARRSRFVEPESASTLSGRVKRLSFSNDRALNPSISGTEVGSLCSTQRAQGFSTYSKHYELSIGCVREKRNANKSKDTKFSNVGRVERLGAAKESATPRRQITPSKIARTSSKRDSLPSSSTPAGKFTPPSRRASLPLPTRSTATTTPYRANADLLRNVDSPNISVNAPRIDKIAEFSLAPGEDHPLFPVPGISSTSAQCSSSSPRSAADYTITKDKCTIQIVDKANVRTSGALVSCGNECSEHVTTAVSSNSSADSRQHKFDTSSYEQRAEALEGLLEFSARLLQQQRFEELEVLLKPFGPEKVSPRETAIWLTKSFKETVV 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01403 591 Gene3D Transferase(Phosphotransferase) domain 1 65 256 - -
Vifa3g01403 591 SUPERFAMILY Protein kinase-like (PK-like) 6 297 IPR011009 -
Vifa3g01403 591 MobiDBLite consensus disorder prediction 366 396 - -
Vifa3g01403 591 ProSiteProfiles Protein kinase domain profile. 1 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01403 591 Pfam Protein kinase domain 6 240 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01403 591 Gene3D Phosphorylase Kinase; domain 1 2 64 - -
Vifa3g01403 591 Coils Coil 1 21 - -
Vifa3g01403 591 MobiDBLite consensus disorder prediction 341 414 - -
Vifa3g01403 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 106 118 IPR008271 GO:0004672|GO:0006468
Vifa3g01403 591 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 8 547 - -
Vifa3g01403 591 SMART serkin_6 3 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01403 Vifa-Chr3 365708491 365712047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01403 30 242 MAP Kinase Kinase Kinase AT1G53570 31.628 4.01e-28 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vifa3g01403 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01403 K08857 - gmx:100810347 918.302