Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01397 ATGATTAGAAGGATTTCATCGAATTACCTATTCTTCGCGTTAGGGTTTCTGCTTTCCACCGCAATCCCGTTCGCTAACGGTGAATCATCCACATGCTTGACGGTTTACAAAAACGGCGGTGCTCCGGCGGTGTTCCAATCCCCGAAATGCCCCCGCTGGAGACTCTTCGATTACGATTCTCCTCGTCAAACTACAACGCGTTGCCAGTCCTCGATGCTCCAGGGACGAAGAAAATCACAAGAGGATCGCACTCTTTGCGTCCTCGATGTTCGCATTCCGTTCCCCGGTCCGGTGGGGGTTAGGGAGGTTGTAGTTGGAATTGTGGCGGTTTTCGATGGTCATAACGGTGCTGAAGCTAGAACATTGCTTCACAGGCGAGACCATGATCATGTAAACTTATTGCATAGATGGAAAGAAATTTTAGGTTGGCAATGGCATGAACTGCATTCTGAAAGGTTGCGGAATGTATTTTCTGCTAATTTTGATGATTCTATTCACTTGGAAATTTTGAAGGAAGCATTGTTGAGAGCAATCCGTGATATTGATGCAAAGTTTTCTGAGGAAGCCTCTAGAAATAACCTTCATTCAGGATCTACAGCAACAGTTGTATTGGTTGCTGACGATAAATTTTTGGTTGCCAATATTGGAGACTCTAAGGCTTTCTTGTGCTCTGAAAATTTTCAGTCTCCTAAGGAGGCTAAAGCCTCCTTATTAAAGCTATATAGGCAGACAGAGCGTGATGGTTCTGTTTCTGTGTGGGATCGTGAAAAGTATAGATTAGCTTCTTCCCACGGGCTCAATCATTTTGCAGTGAAGGAATTGACTAGGGATCATCATCCAGACAGAGAGGATGAAAGAACTCGGGTGGAAGCTTCTGGTGGTCAAGTTCTAAATTGGGGTGGTTTGCCTCGTGTAAATGGTCAGTTGGCCATTACACGAGCTATCGGTGATGTGTTATTTAAAAGTTATGGAGTTATATCTGTCCCAGAAGTGACTGATTGGCAGCCTCTAACTGCTAATGATAGCTACTTGGTGGCTGCATCTGATGGGGTCTTTGAGAATATGGACAATATGGCAGCAGTCGTTGTTCCTCTGGAATCGGCCAACTCTTCTGGGAACTCGCTTAGAAGAAGCTACACTGAAAATGGTGATGCAGGTTTCCCATTATTTGGTATGCAGGAATCTGCTTACAGAAGCTCAGCTAATGATATCACCTCTGGTCTATTGCACGTGGAGCACACTCGTCTGCTAGATACCAAGTTTAAGCGAATATTGGTTGAGGTGAAACATGGTGATTTTGGATGTTTTTATTTAGCAGAAAATCTTGATGATTCAGTGGAATCTAAATGGCCAGCCAAAAAAGATGACTGGGAAGACTATTTGTATGAACTACCCCAGCCTTTACCAAATGACCTTCATCAACAAGCTGAAGTAGACGGCCCTATAATTTTGTACAGCGACCAAAACTTCTGCTTTTACCTGAGCTCAACTATCAATGAAGCCAAAGACCAATGCATAAATCCTGAAGGCTTTGCCAGTTTTATTGGTCTTCTTGGATCAATTCCTTTACATGATACAGGTTCAGATAATAGTTCTTCTGACTATTCGATGCCTGATTCAAGGTATATACTAAGGAGGAGTTTTGGTCGTGGATCATATGGTGAAGTATGGTTGGCTTTTCATTGGAATTGTAATCAGGATAATATTACTGCAGAAATGAGCACGGGTGACAATAGTAGGAACAGAAGCTCAAGTAGTTCTGAGTGTCTGGATGGTCCTTCTAACTACACCCTGTACATTTTGAAACGTATAATGGTAGAGAAAGGCTCTGCTGTGTACTTAAGTGGGCTGAGGGAAAAATATTTTGGCGAAATTTTTTTAAATGCCTCTATGTGCTTTGGAGATGTGCTATTGGCTGGAAAATCAAACTGTGTATTTGAAACATCACAACAATATGGGTCTGAGTATTCATTTCAAGACAAATTTCGACTGCAAGGTGCCATATATGAAGAAGGTTTGAACCATATTGCAAGATATGTGGAATCTTTTGAGTCTCGGTCCAATGAAATATGGCTTGTGTTCAGTTATGAAGGAGTTTCGTTGTCAAAGCTTTTATATACTGCAGAAGATGCAAACAATACAGCTGAGAAAGAAAAACTTGAGCAGGTGAAACAAGTTCAGATACTACACCCATCAAAGTGGTGGCGTTGGTTGAAAACAACAGAAGAAGGGCAAGAAGAAATGCGGAACCTTATCTGGCAGCTGTTGTTGGCACTCAAGTCTTGTCATGACCGCAATATCACACACAGGGACATTAAACCTGGTAAGACATGGGGGTAG 2340 0.4239 MIRRISSNYLFFALGFLLSTAIPFANGESSTCLTVYKNGGAPAVFQSPKCPRWRLFDYDSPRQTTTRCQSSMLQGRRKSQEDRTLCVLDVRIPFPGPVGVREVVVGIVAVFDGHNGAEARTLLHRRDHDHVNLLHRWKEILGWQWHELHSERLRNVFSANFDDSIHLEILKEALLRAIRDIDAKFSEEASRNNLHSGSTATVVLVADDKFLVANIGDSKAFLCSENFQSPKEAKASLLKLYRQTERDGSVSVWDREKYRLASSHGLNHFAVKELTRDHHPDREDERTRVEASGGQVLNWGGLPRVNGQLAITRAIGDVLFKSYGVISVPEVTDWQPLTANDSYLVAASDGVFENMDNMAAVVVPLESANSSGNSLRRSYTENGDAGFPLFGMQESAYRSSANDITSGLLHVEHTRLLDTKFKRILVEVKHGDFGCFYLAENLDDSVESKWPAKKDDWEDYLYELPQPLPNDLHQQAEVDGPIILYSDQNFCFYLSSTINEAKDQCINPEGFASFIGLLGSIPLHDTGSDNSSSDYSMPDSRYILRRSFGRGSYGEVWLAFHWNCNQDNITAEMSTGDNSRNRSSSSSECLDGPSNYTLYILKRIMVEKGSAVYLSGLREKYFGEIFLNASMCFGDVLLAGKSNCVFETSQQYGSEYSFQDKFRLQGAIYEEGLNHIARYVESFESRSNEIWLVFSYEGVSLSKLLYTAEDANNTAEKEKLEQVKQVQILHPSKWWRWLKTTEEGQEEMRNLIWQLLLALKSCHDRNITHRDIKPGKTWG 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01397 779 SMART PP2C_4 59 363 IPR001932 -
Vifa3g01397 779 SUPERFAMILY Protein kinase-like (PK-like) 536 774 IPR011009 -
Vifa3g01397 779 Pfam Protein phosphatase 2C 69 361 IPR001932 -
Vifa3g01397 779 ProSiteProfiles PPM-type phosphatase domain profile. 67 411 IPR001932 -
Vifa3g01397 779 SUPERFAMILY PP2C-like 64 361 IPR036457 -
Vifa3g01397 779 ProSiteProfiles Protein kinase domain profile. 542 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g01397 779 CDD PP2Cc 74 357 IPR001932 -
Vifa3g01397 779 Gene3D Transferase(Phosphotransferase) domain 1 671 777 - -
Vifa3g01397 779 PANTHER PROTEIN PHOSPHATASE 67 364 IPR015655 GO:0004722|GO:0006470
Vifa3g01397 779 Gene3D - 62 413 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01397 Vifa-Chr3 364081746 364095086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01397 146 433 PP2C-type Phosphatase Gene Family AT3G63320 45.181 4.61e-81 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01397 - - gmx:100781476 1205.66