Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01396 ATGAATGATATGTTCTCTGTGAAAGAAGAATACATAGAACCATTTTCATCATCATTTGGATTCGGATGTGAATTGAGTCCACCACCCCAAGCAATTGAAGGACTTCATGAAATTAGACCTCAACCATTCCTCATCAAAACATTTGATGTAGTGAATGATCAAAGTACCAATCATGTAGTTTCGTGGAGCAGAGGTGGCACCAGCTTTGTGATTTGGGATCCACGTGCCTTCTCCAATGATCTTCTTCCCAGATACTTCAAACATAATAATTTCTCAAGCTTTGTCAGACAACTAAACACTTACGGTTTTAGGAAAATAGATCCACATAAATGGGAGTTTGCGAATGAAGGATTCCTAAGAGGGCACAAACATTTGTTGAGGAACATAAGGAGAAAGAAGGGACCTTCTCAGCCTATTGACTGTTTTGGAGTACACGCGGAAATTGATCGTTTAAGGCAAGAGAAACAGGTATTGATGAAGGAGCTTGTGAGTCTTAGACAGAAACAATATAAGGCCACACTGTACCTTCTAGAGATGGAGCAAAGGTTACAAGGGGTAGAAGTCTATCAGAAACAAATGATGTCGTTCTTAGATAGAGTTGTGAAAAACCCTGCAATAATTCACCAACTTCTCCAACAAAAAGAGAAGAAAAAAGAGCTTGAAGAAACCATGGCCAAAAAGAGAAGGTTAATTGGAGGTGAAGAAAGACGAAGCACTGTAAAAGTCGAGCCTTCAGAATTAGGTGATAATGAATTTTCTGTGTCGGAGTTGGAATTGCTAGCTACGGAAATGAACGTTTTCGAAAGGGGCCAGGACAATAAACCTGAGGCACTAGAATTACAAGAGAGGATGGAAAGCGTACTTGATGATGAAGGGTTCTGGGAAGAACTAATGGTTAATGTGGAATTCGAGGGTAGATTTGACATTCCAACTGCTGAAGATAATAATCAGAATGAAGATGATTCAAGTGAACTACCGAATCAAGAATTTAAGATAACCTCTTTTCCTTCCGGTCACTAA 1020 0.3941 MNDMFSVKEEYIEPFSSSFGFGCELSPPPQAIEGLHEIRPQPFLIKTFDVVNDQSTNHVVSWSRGGTSFVIWDPRAFSNDLLPRYFKHNNFSSFVRQLNTYGFRKIDPHKWEFANEGFLRGHKHLLRNIRRKKGPSQPIDCFGVHAEIDRLRQEKQVLMKELVSLRQKQYKATLYLLEMEQRLQGVEVYQKQMMSFLDRVVKNPAIIHQLLQQKEKKKELEETMAKKRRLIGGEERRSTVKVEPSELGDNEFSVSELELLATEMNVFERGQDNKPEALELQERMESVLDDEGFWEELMVNVEFEGRFDIPTAEDNNQNEDDSSELPNQEFKITSFPSGH 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01396 339 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 253 IPR027725 -
Vifa3g01396 339 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g01396 339 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g01396 339 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g01396 339 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g01396 339 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g01396 339 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa3g01396 339 FunFam Heat shock transcription factor 1 36 133 - -
Vifa3g01396 339 Coils Coil 148 168 - -
Vifa3g01396 339 Coils Coil 210 237 - -
Vifa3g01396 339 MobiDBLite consensus disorder prediction 308 339 - -
Vifa3g01396 339 MobiDBLite consensus disorder prediction 321 339 - -
Vifa3g01396 339 Gene3D - 35 133 IPR036388 -
Vifa3g01396 339 SUPERFAMILY "Winged helix" DNA-binding domain 40 132 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01396 Vifa-Chr3 364079922 364081230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01396 29 305 HSF AT3G22830 44.807 4.89e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa3g01396 HSF_DNA-bind 5.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01396 K09419 - gmx:100794264 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02592 5 863056997 863058432 Vifa3g01396 3 364079922 364081230 PCT