Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01395 ATGTTCCCTGCACTTATGTCCAATTCCACTTCTCTCTCAGAACAAACCACTCTCTCTTCTGCTAGATTAAACCACGTTGTTTCAACCATTAATTCCTCACAACTTCCTCAAAAGACCAAGAAAAAAAGAAGCCTCCCTGGTAACCCAGATCCTGATGCGGAAGTGATAGCTTTATCACCAAAGACACTATTAGCAACAAATAGGTTTGTATGTGAGATCTGCAACAAGGGTTTTCAGAGAGATCAAAACCTTCAACTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAACAAAGAAGTGATTAAAAAGAGAGCTTATGTTTGTCCAGAGCCTTCATGTGTTCATCATAACCCTTCAAGAGCTCTTGGTGATCTTACAGGAATTAAGAAACATTACAGTAGAAAACATGGTGAGAAAAAGTGGAAATGTGGTAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTAACAGGAAGGACAGCTTCATAACACACAGAGCATTTTGTGATGCATTAGCTGAAGAGAGTGCAAGAATGTCAGCAAACATATTATCCACTGCCACCAACACTAACACAAACTCATTAGCCCAATCTCTCTTCCTCTTCCAAAACCAACAAAGCCACATCACATGGGACCCACCTCAACAAAACCCTAACCCTAGCAACCTCCATCACAACATCAAGCCTGAATCTCAACCCTTCCCTCACCCATTTCTTCATCACACGACCAACAAGACCAACATCATGGCATCATCACCCTTCCACGTCAGCACACAACAGCCTACCACCAATTCCGCCACGTCACCACACCTCTCAGCAACTGCACTTCTCCAGACAGCAGCAACCGTCGGTGCTGCCGCCATCACAGGTCAGCACACCTCACAACTCAGCATGGGCGAGCTCGGATCGGTGACTCATCTAGACTCGGTTGATCACTACATTAACAACATGAGAGGCTTCACAAAGAATGACCAAGGTCTCACGAGAGACTTTCTTGGCCTTACAAACAACGGCGGTGGCTCCATCGACGTAAAGGATATGCTAACATTCACAGGGGGTGTAGAGTATGAACAAAACATGATGTTCAAGTCACAACAAGGTTTTGGTTTCTTTGGAACAACGACAACAAGTGTTCCCGAATCATGGGGGAATTGTTAG 1233 0.4388 MFPALMSNSTSLSEQTTLSSARLNHVVSTINSSQLPQKTKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCGKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFNRKDSFITHRAFCDALAEESARMSANILSTATNTNTNSLAQSLFLFQNQQSHITWDPPQQNPNPSNLHHNIKPESQPFPHPFLHHTTNKTNIMASSPFHVSTQQPTTNSATSPHLSATALLQTAATVGAAAITGQHTSQLSMGELGSVTHLDSVDHYINNMRGFTKNDQGLTRDFLGLTNNGGGSIDVKDMLTFTGGVEYEQNMMFKSQQGFGFFGTTTTSVPESWGNC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01395 410 FunFam protein indeterminate-domain 12-like 48 117 - -
Vifa3g01395 410 SMART c2h2final6 146 166 IPR013087 -
Vifa3g01395 410 SMART c2h2final6 111 141 IPR013087 -
Vifa3g01395 410 SMART c2h2final6 69 91 IPR013087 -
Vifa3g01395 410 Gene3D Classic Zinc Finger 123 204 - -
Vifa3g01395 410 MobiDBLite consensus disorder prediction 30 52 - -
Vifa3g01395 410 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 372 IPR031140 -
Vifa3g01395 410 Gene3D Classic Zinc Finger 48 118 - -
Vifa3g01395 410 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Vifa3g01395 410 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Vifa3g01395 410 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Vifa3g01395 410 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01395 Vifa-Chr3 362605398 362607843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01395 23 381 IDZ Gene Family AT4G02670 51.832 2.82e-121 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g01395 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01395 K25870 - gmx:100780056 518.85