Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01393 ATGAATATTGATGGTGTTGAAGTTGGCACAATTTCTCTTCTTGGTAGGGTGTGCAGCAAAGCTGGACAAATCACTGATGTTAAATTTGTACTTGATGATGGTACTGGAACGATTGAGTGCACTAAATGGCTTCAAGAACCTGCAGATTCAATTCCAATGGAGAGTATTTTAAATGGAATGCCTGTGACCGACTTCAACGAGATTTCCCACCATTTCCTTGATTGCATATATGCTCATCTATATAATTTGAAGTTTCGGGCTAGCAATCCCAATCAGCAACATGTTCCTAATTCCACACAAATCACTCCCACGAGAGGTCGTCAATTTCAAGTTGTATCAGCAAATCAATTCTTAGGTCAAAATAATAATGATCAGAAGAGTGTTGAACAATTGGTGTCAGATTTCTTGCTTCTTCCCCAAAACAGGGAAATGACTGAGGGAACCCCTCATGATGTTATTAAAGAACATCTTAGAATTCACCTAGATAGACTTAAGCTGGCTATTGAAAATCTTACGTATGAAGGTCAGATATATGAAGGTGTAACTGATAGATATAAGTCACCTATTGATGGTTGA 576 0.3802 MNIDGVEVGTISLLGRVCSKAGQITDVKFVLDDGTGTIECTKWLQEPADSIPMESILNGMPVTDFNEISHHFLDCIYAHLYNLKFRASNPNQQHVPNSTQITPTRGRQFQVVSANQFLGQNNNDQKSVEQLVSDFLLLPQNREMTEGTPHDVIKEHLRIHLDRLKLAIENLTYEGQIYEGVTDRYKSPIDG 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01393 191 Gene3D - 1 62 IPR012340 -
Vifa3g01393 191 Coils Coil 154 174 - -
Vifa3g01393 191 PANTHER REPLICATION PROTEIN A-RELATED 2 186 IPR040260 -
Vifa3g01393 191 Pfam Replication protein A C terminal 79 181 IPR014892 -
Vifa3g01393 191 CDD RPA2_DBD_D 10 80 - -
Vifa3g01393 191 SUPERFAMILY Nucleic acid-binding proteins 3 83 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01393 Vifa-Chr3 361934252 361934897 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01393 1 139 Core DNA Replication Machinery Family AT3G02920 34.524 1.10e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01393 K10739 - gmx:100782819 191.43