Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01381 ATGTCGAATCATCCCTCCGATACCCCCGCAGACGATTTCCTGGAGCAAATTCTCGGCCTCCCGAATTTCACCTCCGCCGACGGAACCGACGCTTCTTCATTAGCTTCTCCGATGATGCTGCAGCTTAACTCCGGGGACGGTGCTACTCATCTTGCTCCCGGAGCGGGATTTCATGCACCGGTCTACCATTTGGGCCTGAGCTTGGACCAGGGTGCGGGAGGGTTCTTGAAGCCCGATGATGCTTCCGGAAGTGGCAAACGGTTCCGGGAAGATGTTGTTGATACCAGACCTAAGAATACTTTTCATGGGCAGCCCATGCCTACTACAGTTCCTACTGCTCCACATCCACCAGCAATGCGTCCTAGAGTGCGGGCGAGAAGAGGACAGGCTACAGATCCACACAGCATCGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCCAGTGTCAACAAGACAGATCGAGCTGCAATGCTCGACGAAATTGTGGATTATGTCAAATTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCGGTGGCACCACTAGTAACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAACCAGCTTGGGAGAAGTGGTCTAATGATGGCACAGAAAAGCAAGTAGTTAAGCTCATGGAAGAAAATGTTGGGGCTGCGATGCAATTTCTTCAATCCAAGGCACTCTGCATCATGCCAATCTCACTGGCATCCGCAATATACCAATCACAACCACCAGACAACTCCAGTATAGTTAAGCCCGAAACTACTCCTCCTTCTTAG 858 0.5058 MSNHPSDTPADDFLEQILGLPNFTSADGTDASSLASPMMLQLNSGDGATHLAPGAGFHAPVYHLGLSLDQGAGGFLKPDDASGSGKRFREDVVDTRPKNTFHGQPMPTTVPTAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVVKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDNSSIVKPETTPPS 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01381 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 127 188 IPR036638 GO:0046983
Vifa3g01381 285 SMART finulus 135 184 IPR011598 GO:0046983
Vifa3g01381 285 MobiDBLite consensus disorder prediction 77 133 - -
Vifa3g01381 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 129 178 IPR011598 GO:0046983
Vifa3g01381 285 MobiDBLite consensus disorder prediction 82 97 - -
Vifa3g01381 285 Pfam Helix-loop-helix DNA-binding domain 134 178 IPR011598 GO:0046983
Vifa3g01381 285 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 264 - -
Vifa3g01381 285 FunFam Basic helix-loop-helix transcription factor 124 186 - -
Vifa3g01381 285 Gene3D - 124 186 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01381 Vifa-Chr3 355794569 355797287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01381 57 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.723 3.15e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g01381 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01381 - - gmx:100797789 441.039