Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01378 ATGGAAAACTCATTATTAAAAAACCATGAATCAGAACTGAATCTCATGGCTACAGAGCTAAGGTTAGGATTACCCGGTAGTGATGATCATGAAGTCGAAAAACTTCCATCCAATTTCTCTATTCTTAGAAACAACAAGAGATCTTCACCAGAATCAACCGAGGTAGAGTCCATCAACAAGACCAAAATGAATACTTCTGATGATGATGATTCTAATATCACTAATGATGATCAAGATAATGCTCCACCTTCAAAGGCACAAGTTATTGGATGGCCACCAATTAGATCTTATAGGAAGAATAGCTTACAACAGAAGAAAGGTGAAGAGGTTGGGATGTACATGAAAGTGAGTATGGCTGGTGCACCATATTTAAGGAAGATAGATCTCAAAGTTTACAAGAGTTACTCGGAACTTCTCGAGGTTTTGGAAAATATGTTCAAGTGTACATTTGGTGAATATTCTGAAAGAGAAGGGTATAATGGATCTGAATTTGTTCCAACTTATGAAGATAAAGATGGTGATTGGATGCTTGTTGGAGATGTTCCTTGGGAAATGTTCATGTCTTCTTGTAAGAGGTTGAGAATTATGAAAGGATCTGAAGCTAAAGGATTGGGTTGTTTTTGA 624 0.367 MENSLLKNHESELNLMATELRLGLPGSDDHEVEKLPSNFSILRNNKRSSPESTEVESINKTKMNTSDDDDSNITNDDQDNAPPSKAQVIGWPPIRSYRKNSLQQKKGEEVGMYMKVSMAGAPYLRKIDLKVYKSYSELLEVLENMFKCTFGEYSEREGYNGSEFVPTYEDKDGDWMLVGDVPWEMFMSSCKRLRIMKGSEAKGLGCF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01378 207 FunFam Auxin-responsive protein 106 207 - -
Vifa3g01378 207 MobiDBLite consensus disorder prediction 38 60 - -
Vifa3g01378 207 Pfam AUX/IAA family 18 205 IPR033389 -
Vifa3g01378 207 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 202 IPR003311 GO:0005634|GO:0006355
Vifa3g01378 207 SUPERFAMILY CAD & PB1 domains 108 197 - -
Vifa3g01378 207 MobiDBLite consensus disorder prediction 27 86 - -
Vifa3g01378 207 Gene3D - 105 207 - -
Vifa3g01378 207 ProSiteProfiles PB1 domain profile. 111 198 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01378 Vifa-Chr3 355586952 355587784 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01378 102 204 B3 DNA Binding Superfamily AT4G23980 36.893 2.77e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa3g01378 AUX_IAA 5.2e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01378 K14484 - gmx:100780752 302.367