Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01376 ATGGAAGTTGCAGGTCTGAAAAAGGAAGCGAAGATGGTGTTTGATGAAACTGAACTGACGTTGGGATTGCCTGGAAATGGAAGCAAAGTAACAGAAGTAGTAGTAAGGAAGAGAGGTTTCAGTGAAACTGAGAGTGAGAGTGACAATGAAAGCGAAATAACCACTGTAGATTTGAAGCTTAATCTCTCTCCCAAAGAAGGTGCAGCAGATCCGCAGTTTAAGCCTAAGGAGATAGCTCTTCTGGTTTCTGATTCTCGCACCAAGCCTCCTGCTAAGGCACAAGTGGTGGGATGGCCACCGGTGAGGTCGTTCAGGAAGAACCTGTTTGCAGGGCAAAAGAGCAGTGAAGGATCAGAAGAAACCAAGAACAAAAGCATTGACGGTTCTAATGCAATAACCTTTGTGAAAGTTAGCATGGATGGAGCACCTTATCTTCGCAAAATAGACCTCAAAATGTACAAGAGTTACCCGGAGCTTTCTGATGCCTTAGCCAAAATGTTCAACTCCTTCACCACAGGAAATTGTGAATCCCAAGGAATCAAGGATTTCATGAATGAGAGTAACAAGTTGATGGATCTATTGAATAGCTCTGACTATGTTCCAACTTATGAAGACAAAGATGGTGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTCATGGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAAGCTATTGGACTGGCACCAAGAGCCATGGAAAAGTGCAAGAACAGAAGCTAG 756 0.4365 MEVAGLKKEAKMVFDETELTLGLPGNGSKVTEVVVRKRGFSETESESDNESEITTVDLKLNLSPKEGAADPQFKPKEIALLVSDSRTKPPAKAQVVGWPPVRSFRKNLFAGQKSSEGSEETKNKSIDGSNAITFVKVSMDGAPYLRKIDLKMYKSYPELSDALAKMFNSFTTGNCESQGIKDFMNESNKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFMESCKRLRIMKGKEAIGLAPRAMEKCKNRS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01376 251 ProSiteProfiles PB1 domain profile. 132 233 IPR000270 GO:0005515
Vifa3g01376 251 Pfam AUX/IAA family 16 242 IPR033389 -
Vifa3g01376 251 FunFam Auxin-responsive protein 127 243 - -
Vifa3g01376 251 Gene3D - 127 245 - -
Vifa3g01376 251 SUPERFAMILY CAD & PB1 domains 133 232 - -
Vifa3g01376 251 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 14 238 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01376 Vifa-Chr3 353921529 353922951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01376 112 241 B3 DNA Binding Superfamily AT4G23980 31.298 1.36e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa3g01376 AUX_IAA 6.3e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01376 K14484 - gmx:100780214 331.257