Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01369 ATGCAAGAGATGACAAGAATAAGACAATTATATAATAAGAGTAACAAGATTGCAAAATGTTTGTCTTGTGATCTTTGCAACCAACTTCTCAAAGACGCCACTAAAATTATCGAGTGTTTTCATACTTTTTGCAAGGAGTGTATACATTCTAAAATCGAAGAAGAAGAATTGGAATGTTGTCCTGTATGCGACATTGATTTAGGCCCCGATCCTTTTACCAAAATGAGGGCGGATATTAGTTTGCAAAACATGAGGAATCACCTATTTCCTATTGGGAAAGAAAAGGAGGCATATGAATACCTCCCAAAAGTTCTAATGAAAGCCAATGGGCATCCTATGCCTAAGGTGCAACATTTTAGTACTTCAAGTTCTACAAATAAAAGAAAACTCAAGAAATCAAAAGGCACCAGTTCTTCTGAGAAACACATCAATAAGAAAATGAAGATCGAGGATGAAGCTCGAGATGATAATTAA 474 0.3544 MQEMTRIRQLYNKSNKIAKCLSCDLCNQLLKDATKIIECFHTFCKECIHSKIEEEELECCPVCDIDLGPDPFTKMRADISLQNMRNHLFPIGKEKEAYEYLPKVLMKANGHPMPKVQHFSTSSSTNKRKLKKSKGTSSSEKHINKKMKIEDEARDDN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01369 157 Pfam Zinc finger, C3HC4 type (RING finger) 23 63 - -
Vifa3g01369 157 ProSiteProfiles Zinc finger RING-type profile. 23 64 IPR001841 -
Vifa3g01369 157 MobiDBLite consensus disorder prediction 111 157 - -
Vifa3g01369 157 MobiDBLite consensus disorder prediction 136 157 - -
Vifa3g01369 157 SMART ring_2 23 63 IPR001841 -
Vifa3g01369 157 ProSitePatterns Zinc finger RING-type signature. 39 48 IPR017907 -
Vifa3g01369 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 102 IPR013083 -
Vifa3g01369 157 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 13 146 IPR044807 GO:0004842
Vifa3g01369 157 SUPERFAMILY RING/U-box 17 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01369 Vifa-Chr3 353043496 353045993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01369 13 156 C3H Transcription Factor Family AT2G30580 39.744 3.34e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01369 K16277 - psat:127093598 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02635 5 876386175 876390090 Vifa3g01369 3 353043496 353045993 PCT