LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g01365	ATGGAGGAAGTTGAACAAGCTAGTAGAACAGCTGTTGAGAGCTGTCATAGAGTTCTGAGTATGTTATCTCAACCAAGAGATCAAGTTCATCATAAGAATTTAATGGTGGAAACTGGTGAAGCTGTGAATAGGTTCAAGAAAGTTGTGTCTTTGCTTCATGATGGTATGGGTCATGCAAGAGTTAGGAAGTTTAGAAATCAGAAACAAGTTCCTTTTCCTCAAAATGTTTTCTTGGACAATCCCGTTTGCAAGAAACCGAACAACCATCACACCAAAAAGGTTCATTTTGCTCATATTACTTATCTGGAGAATTCGGGTAAGGAACTTGCACTGGCCGTGAGAAATCCAAACACTTCTTTGGAATTGAGCTCTAATGGGAAAAGTCCTCTTCCCCTTGCTCAACAAGCTGCGTCGACCCAGTCGACTCACTATCAGTTCTTTCAGCATCAGCAGCAGCAGCAGCAACAGAGGTTGATGATGCAGCAGCAACAGCAGCAGCAGCACCAGCAGCAGCAGCAAATGAAGCATCAAGCAGAAATGATGTTTCGAAGGAACATTAACAGCATAAACCTTAGTTTTGACAACACTACTAGCGGCACGCCGACAATGTCGTCTACTAGGTCTTTCATTTCGTCGTTGAGTATAGACGGAAGTGTTGCTAACATGGATGGAAGTCAGTTCCATTTAGTAGGAGCTCCGATCTCTTCGGATCAGAATTCGCAACAGCACAAGAGAAAATGTTCGGCTAGAGGCGATGAGGGAAATCTGAAATGTGGTAGCAGTTCAAAATGCCATTGCTCAAAGAAGAGGAAGCATAGAGTGAAGAGATCAATTAAGGTGCCTGCTATCAGCAACAAACTTGCCGATATCCCTCCTGATGATTACTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGCTCTCCTCACCCTAGGGGATATTATAAGTGCAGCAGCATGAGAGGATGCCCGGCTAGGAAGCATGTCGAGAGGTGCTTGGAAGAGCCAACTATGCTAATTGTTACCTATGAAGGGGAGCATAATCACCCCAAGGTACCAACTCAATCTGCAAATGCATGA	1080	0.4463	MEEVEQASRTAVESCHRVLSMLSQPRDQVHHKNLMVETGEAVNRFKKVVSLLHDGMGHARVRKFRNQKQVPFPQNVFLDNPVCKKPNNHHTKKVHFAHITYLENSGKELALAVRNPNTSLELSSNGKSPLPLAQQAASTQSTHYQFFQHQQQQQQQRLMMQQQQQQQHQQQQQMKHQAEMMFRRNINSINLSFDNTTSGTPTMSSTRSFISSLSIDGSVANMDGSQFHLVGAPISSDQNSQQHKRKCSARGDEGNLKCGSSSKCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKVPTQSANA	359

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g01365	359	Pfam	WRKY DNA -binding domain	293	350	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vifa3g01365	359	SUPERFAMILY	WRKY DNA-binding domain	289	351	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vifa3g01365	359	ProSiteProfiles	WRKY domain profile.	286	352	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vifa3g01365	359	Gene3D	WRKY domain	275	353	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vifa3g01365	359	FunFam	WRKY transcription factor 65	275	352	-	-
	Vifa3g01365	359	Pfam	Plant zinc cluster domain	244	289	IPR018872	-
	Vifa3g01365	359	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	2	356	IPR044810	GO:0003700
	Vifa3g01365	359	SMART	WRKY_cls	291	351	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vifa3g01365	359	MobiDBLite	consensus disorder prediction	235	254	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g01365	Vifa-Chr3	350445893	350447508	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g01365	1	356	WRKY Transcription Factor Family	AT2G30590	56.736	9.99e-119	347

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vifa3g01365		WRKY	5.1e-26	CL0274