Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01364 ATGGCAGATGTTGAACCCGAGGTCGCCGCACAGGGAGTGCCAAAGAAGAGGACATTTAAGAAGTTTAGTTTCAGAGGTGTTGATCTCGATGCGCTCTTGGATATGTCCACTGATGAACTCGTTAAGCTCTTCTCAGCTCGTGCACGTAGAAGGTTTCAACGTGGTTTGACCCGCAAACCTATGGCACTAATCAAGAAGCTCCGCAAGGCTAAACGCGAGGCCCCCTGCTGCATTATTGGTGTCTACAATGGGAAGACCTTCAATCAAGTTGAGATTAAACCTGAAATGATTGGCCACTATCTAGCTGAATTCTCAATCTCATACAAGCCTGTTAAGCACGGTAGGCCTGGTATTGGTGCTACTCACTCCTCCAGGTTTATTCCTCTCAAGTGA 393 0.4733 MADVEPEVAAQGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPCCIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01364 130 SUPERFAMILY Ribosomal protein S19 57 114 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vifa3g01364 130 Hamap 30S ribosomal protein S19 [rpsS]. 15 119 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vifa3g01364 130 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 10 75 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vifa3g01364 130 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 130 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vifa3g01364 130 Pfam Ribosomal protein S19 77 113 IPR002222 GO:0003735|GO:0005840|GO:0006412
Vifa3g01364 130 ProSitePatterns Ribosomal protein S19 signature. 83 107 IPR020934 GO:0003723
Vifa3g01364 130 Gene3D 30s Ribosomal Protein S19; Chain A 77 130 IPR023575 GO:0003735|GO:0005840|GO:0006412
Vifa3g01364 130 Gene3D 30s Ribosomal Protein S19; Chain A 9 76 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01364 Vifa-Chr3 350427325 350428816 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01364 1 130 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 75.000 4.38e-75 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01364 K02958 - tpra:123918140 237.269