Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01363 ATGGCAACAAAAACTTCCAAACCACTTGCTTCACATCCTACATATGAAGAGATGATTAAGGAAGCGATTGTGCTGCTGAAAGAGAGAACAGGTTCAAGCCAATACGCGATTGCGAAATTCATCGAAGAGAAACACAAACAGCTTCCTCCAACTTTCAAGAAGCTATTGCTCCAAAATTTGAAGAAGAATGTTGCTTCTGGAAAGCTTGTTAAGGTTAAAGGTTCATTCAAGCTTTCTCCGGCGGTGAAACCAGCACCGGCGACGAAACCTGCAGTCGCAAAGCCAAAGACAAAGCCGGTTGCTAAGGTGACAGCGGCTAAAGCTAAGCCAGCCGCGAAGCCGAAGGCGAAAGCCGTTGTGAAGCCGAAGGTTGCTTCTAAGGCTAAAGCTGTTGTCAAGGCGAAGGCGGTTGTGAAACCGAAGGCTAAGGCTGCGAAGACGTCGACTAGAACGACGCCGGGGAAAAAGGTTGCTATTGCGAAGGCGGTGGTGAAGAAAGCTGTGGCGGCGAAAAAAGCTCCGGTGAAGAGCGTGAAAGCGAAAAGTGTGAAGACTCCGGTGAAGAAAGTTACGACGAAGAGAGGGGGAAGAAAATAG 597 0.4858 MATKTSKPLASHPTYEEMIKEAIVLLKERTGSSQYAIAKFIEEKHKQLPPTFKKLLLQNLKKNVASGKLVKVKGSFKLSPAVKPAPATKPAVAKPKTKPVAKVTAAKAKPAAKPKAKAVVKPKVASKAKAVVKAKAVVKPKAKAAKTSTRTTPGKKVAIAKAVVKKAVAAKKAPVKSVKAKSVKTPVKKVTTKRGGRK 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01363 198 MobiDBLite consensus disorder prediction 171 198 - -
Vifa3g01363 198 CDD H15 10 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01363 198 MobiDBLite consensus disorder prediction 182 198 - -
Vifa3g01363 198 SUPERFAMILY "Winged helix" DNA-binding domain 10 89 IPR036390 -
Vifa3g01363 198 Pfam linker histone H1 and H5 family 12 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01363 198 PANTHER HISTONE H1 5 181 - -
Vifa3g01363 198 Gene3D - 7 98 IPR036388 -
Vifa3g01363 198 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01363 198 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01363 Vifa-Chr3 349697198 349697893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01363 13 96 Single Myb Histone (SMH) Gene Family AT1G72740 36.471 2.48e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01363 K11275 - psat:127122354 116.316