Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01362 ATGGCCACAGAAGAACCAATAGTCGCGGTGGAATCAGTTCCCGAACCAATTGTCACCGAACCAACCGTCACCGAGCCTGAGGTCCCGGAGAAGGATGAACCAACTGGTGAAGTAGAGAAGACCAAGAAAACGAAGGAGTCCAAGCCTAAGAAAGCTTCCAAACCACGAAACCCTGCTTCCCATCCTTCTTACGAAGAGATGATTAAGGACGCGATAGTCTCGCTGAAGGAGAAGAGTGGCTCGAGCCAATATGCGATTGCGAAATTCATTGAAGAGAAACACAAGCAGCTTCCTGCTAACTTCAAGAAGCTATTGCTTCAAAATTTGAAGAAAAAAGTTGCATCTGGAAAGCTTGTTAAGGTGAAAGGTTCGTTCAAGCTTTCTTCAGCGGCTAAGAAGCCTGCCGTCGCCAAGCCGAAGACAAAGCCAGCTGCTAAGGTTGCTTCAAAGGCCAAAGCTGTAGCAGCCAAGCCCAAAAAAGCTGCTGCCAAGCCCAAAACGGTTGCTTCTAAGGCTAAACCAGTTGCTGCGAAGACTAAAGTTGCTGCCAAGGCTAAGCCAGTTGTGAAACCGAAGTCCAAAGGGAAGCCAGCGAAGGTTGCAAAGACATCGGCGAAGACAACACCGGGGAAGAAAGTTGCCGCTGCGAAGAAAGTTGAGGTTGCAAAGAAAGTTCCGGTTAAGAGCGTTAAGGCTAAAAGCGTGAAGACTCCAGTGAAGAAGGTTTCTGTTAAGAGAGGTGGAAAGAAATGA 753 0.4807 MATEEPIVAVESVPEPIVTEPTVTEPEVPEKDEPTGEVEKTKKTKESKPKKASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKKPAVAKPKTKPAAKVASKAKAVAAKPKKAAAKPKTVASKAKPVAAKTKVAAKAKPVVKPKSKGKPAKVAKTSAKTTPGKKVAAAKKVEVAKKVPVKSVKAKSVKTPVKKVSVKRGGKK 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01362 250 MobiDBLite consensus disorder prediction 234 250 - -
Vifa3g01362 250 MobiDBLite consensus disorder prediction 25 46 - -
Vifa3g01362 250 CDD H15 58 140 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01362 250 PANTHER HISTONE H1 40 231 - -
Vifa3g01362 250 SUPERFAMILY "Winged helix" DNA-binding domain 57 137 IPR036390 -
Vifa3g01362 250 PRINTS Histone H5 signature 214 233 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01362 250 PRINTS Histone H5 signature 74 91 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01362 250 PRINTS Histone H5 signature 47 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01362 250 PRINTS Histone H5 signature 153 167 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01362 250 PRINTS Histone H5 signature 192 209 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01362 250 Pfam linker histone H1 and H5 family 61 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01362 250 MobiDBLite consensus disorder prediction 185 199 - -
Vifa3g01362 250 SMART h15plus2 58 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01362 250 MobiDBLite consensus disorder prediction 1 65 - -
Vifa3g01362 250 MobiDBLite consensus disorder prediction 128 250 - -
Vifa3g01362 250 Gene3D - 56 136 IPR036388 -
Vifa3g01362 250 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 60 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01362 Vifa-Chr3 349646797 349647701 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01362 57 140 Single Myb Histone (SMH) Gene Family AT1G17520 34.483 2.36e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01362 K11275 - psat:127122354 149.828