Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01361 ATGAAGACCAAGAAACCCAAAGAATCAAAGCCGAAAAAAGCTTCCAAACCACGAAGCCCTTCCTCTCATCCTACCTACTCGGAGATGATTAAAGACGCAATTGTGTCGCTGAAGGAGAAGAATGGTTCGAGCCAATGTGCTATTGCGAAGTTCATAGAAGAAAAGAACAAACCTCTCCCTTCAAACTTCAAGAAGCTATTGCTTCAAAACTTGAAGAAGGACGTTGCTTCTGGAAAGCTTGCAAAGGTTAAAGCTTCATTCAAGCTTTCTTTAGCGGCTAAGAAGCCGGTAGTTGCCAAGCCGAAGACAAAGCCAGCTGCCAAGGTGAAGAAGGCTGTGAAGTCCAAGACAGCCGCTAAGCCAAAAGCTAAAGCTGTTGTAAAGCCAAATGTTGTTTCAAAGGCCAAACCTATAACCGCCAAGCCAAAATTTGCGGCATCAAAGCCCAAAGCTGGAGTGAAATCGAAGCCCAATGAGAGGCCTACAAAGGTTGCAAAGATGACTCTGGGGAAGAAAGGGAGTGTTTCGAAGCCTGCACTGAAGAAAACTGCGGCAGTGAAGAGCATTAAGTCTCCAGCAAAAAAGGTTTCTATGAAGATAGGGGGAAGGAAATGA 615 0.4504 MKTKKPKESKPKKASKPRSPSSHPTYSEMIKDAIVSLKEKNGSSQCAIAKFIEEKNKPLPSNFKKLLLQNLKKDVASGKLAKVKASFKLSLAAKKPVVAKPKTKPAAKVKKAVKSKTAAKPKAKAVVKPNVVSKAKPITAKPKFAASKPKAGVKSKPNERPTKVAKMTLGKKGSVSKPALKKTAAVKSIKSPAKKVSMKIGGRK 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01361 204 SMART h15plus2 20 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01361 204 Gene3D - 17 104 IPR036388 -
Vifa3g01361 204 SUPERFAMILY "Winged helix" DNA-binding domain 19 96 IPR036390 -
Vifa3g01361 204 Pfam linker histone H1 and H5 family 23 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01361 204 CDD H15 20 101 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01361 204 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 22 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01361 204 PANTHER HISTONE H1 5 182 - -
Vifa3g01361 204 MobiDBLite consensus disorder prediction 100 121 - -
Vifa3g01361 204 MobiDBLite consensus disorder prediction 1 28 - -
Vifa3g01361 204 MobiDBLite consensus disorder prediction 138 204 - -
Vifa3g01361 204 MobiDBLite consensus disorder prediction 104 118 - -
Vifa3g01361 204 PRINTS Histone H5 signature 36 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01361 204 PRINTS Histone H5 signature 110 124 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01361 204 PRINTS Histone H5 signature 168 187 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01361 204 PRINTS Histone H5 signature 9 30 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01361 Vifa-Chr3 349569228 349569947 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01361 19 151 Single Myb Histone (SMH) Gene Family AT1G17520 29.412 1.15e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01361 K11275 - rvl:131313713 124.79