Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01360 ATGGCCACAGAAGAACCCATCGTCGCTGTGGAATCCGTTCTCGAACCAATTGTCACCGAACCAACAATTATCGAACCTCAGGTTCCAGAGAAGGAGGAACCAAAGGGTGAAGTAAAGAAGACAAAGAAAGCCAAGGAGTCGAAACCTAAGAAAGCTTCCAAACCACGAAACCCAGCTTCACATCCTACTTACGAAGAGATGATTAAGGATGCAATAGTGTCGCTGAAGGAGAAAAATGGTTCAAGCCAATACGCGATTGCAAAGTTCATTGAAGAGAAGCACAAACAGCTTCCAGCCAACTTCAAGAAGCTGTTGCTCCAAAATTTGAAGAAAAAAGTTGCTTCTGGAAAGCTTGTTAAGGTGAAAGGTTCGTTCAAGCTGTCTGCAGCTGCGAAAAAGCCCGCAGTCGCCAAGCCGAAGTCAAAGCCAGCTGCAAAGGCAAAGTCTGTGAAGGCTAAGGCAGCCGCTAAGCCAAAAGCTAAAGCTGCTGTCAAGCCAAAGGTTGCTTCAAAGGCCAAAGCTGTAGCAGCCAAGCCTAAAGCCGCTGTTAAGCCCAAAGCTGCTGCCAAGCCTAAAACTGTTGCGAAGTCCAAAGCAGCTGTGAAACCAAAGCCCAAGGCTAAGCCTGCAAAGGTTGCAAAGACATCTACTAAGACGACACCAGGAAAGAAAGTTGCTCTTGCAAAGACTGCACCTAAGAAAGCAGCGGCTGCAAAGAAAGCTACCGTGAAGAGTGTGAAAGCGAAAACCGTAAAATCAGCAGCAAAGAAGGCTACAGGATTGAAGAGAGGAGGAAGGAAATGA 804 0.4689 MATEEPIVAVESVLEPIVTEPTIIEPQVPEKEEPKGEVKKTKKAKESKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSAAAKKPAVAKPKSKPAAKAKSVKAKAAAKPKAKAAVKPKVASKAKAVAAKPKAAVKPKAAAKPKTVAKSKAAVKPKPKAKPAKVAKTSTKTTPGKKVALAKTAPKKAAAAKKATVKSVKAKTVKSAAKKATGLKRGGRK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01360 267 MobiDBLite consensus disorder prediction 128 165 - -
Vifa3g01360 267 MobiDBLite consensus disorder prediction 26 43 - -
Vifa3g01360 267 CDD H15 58 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01360 267 MobiDBLite consensus disorder prediction 183 267 - -
Vifa3g01360 267 MobiDBLite consensus disorder prediction 197 211 - -
Vifa3g01360 267 Pfam linker histone H1 and H5 family 61 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01360 267 Gene3D - 55 149 IPR036388 -
Vifa3g01360 267 SMART h15plus2 58 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01360 267 PRINTS Histone H5 signature 47 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01360 267 PRINTS Histone H5 signature 147 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01360 267 PRINTS Histone H5 signature 74 91 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01360 267 PRINTS Histone H5 signature 180 197 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01360 267 MobiDBLite consensus disorder prediction 144 165 - -
Vifa3g01360 267 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 60 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01360 267 SUPERFAMILY "Winged helix" DNA-binding domain 57 137 IPR036390 -
Vifa3g01360 267 PANTHER HISTONE H1 40 236 - -
Vifa3g01360 267 MobiDBLite consensus disorder prediction 21 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01360 Vifa-Chr3 349482616 349483523 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01360 62 140 Single Myb Histone (SMH) Gene Family AT1G72740 35.000 4.47e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01360 K11275 - psat:127122354 149.443