Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01359 ATGGCCACAGAAGAACCAATTGTCGCGGTGGAATCAGTTCCCGAACCAATTGTGACCGAACCAACCGTCACCGAGCCTGAGGTCCCGGAGAAGGATGAACCAACTGGTGAAGTAGAGAAGACCAAGAAAACGAAGGAGTCCAAGCCTAAGAAAGCTTCCAAACCACGAAACCCTGCTTCCCATCCTTCTTACGAAGAGATGATTAAGGACGCGATAGTCTCGCTGAAGGAGAAGAGTGGCTCGAGCCAATACGCGATTGCGAAATTCATTGAAGAGAAACACAAGCAGCTTCCTGCTAACTTCAAGAAGCTATTGCTTCAAAATTTGAAGAAAAAAGTTGCATCTGGAAAGCTTGTTAAGGTGAAAGGTTCGTTCAAGCTTTCTTCAGCGGCTAAGAAGCCTGCCGTCGCCAAGCCGAAGACAAAGCCAGCTGCTAAGGCTAAGTCTGTGAAGGCTAAGGCAGCCACTAAGCCAAAAGCTAAAGCTGCTGTCAAGCCAAAGGTTGCTTCAAAGGCCAAAGCTGTAGCAGCCAAACCTAAAGCCGGTGTTAAGCCGAAAGCTGCTGCCAAGCCTAAAACTGTTGCGAAGTCCAAAGCAGCTGTGAAACCAAAGCCCAAGGCTAAGCCTGCAAAAGTTGCAAAAACATCGACGAAGACGGCCCCAGGAAAGAAAGTTGCTGTTGCGAAGGCTGCACCTAAGAAAGCAGCGGCTGCAAAGAAAGTTCCCGTGAAAAGTGTGAAGGCTAAAACCGTAAAAGCACCAGCAAAGAAGGCTACTGTTGCGAAGAGAGGGGGAAGGAAATGA 804 0.4863 MATEEPIVAVESVPEPIVTEPTVTEPEVPEKDEPTGEVEKTKKTKESKPKKASKPRNPASHPSYEEMIKDAIVSLKEKSGSSQYAIAKFIEEKHKQLPANFKKLLLQNLKKKVASGKLVKVKGSFKLSSAAKKPAVAKPKTKPAAKAKSVKAKAATKPKAKAAVKPKVASKAKAVAAKPKAGVKPKAAAKPKTVAKSKAAVKPKPKAKPAKVAKTSTKTAPGKKVAVAKAAPKKAAAAKKVPVKSVKAKTVKAPAKKATVAKRGGRK 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01359 267 MobiDBLite consensus disorder prediction 25 46 - -
Vifa3g01359 267 SUPERFAMILY "Winged helix" DNA-binding domain 57 137 IPR036390 -
Vifa3g01359 267 CDD H15 58 140 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01359 267 PANTHER HISTONE H1 40 240 - -
Vifa3g01359 267 MobiDBLite consensus disorder prediction 128 267 - -
Vifa3g01359 267 MobiDBLite consensus disorder prediction 197 211 - -
Vifa3g01359 267 Gene3D - 55 149 IPR036388 -
Vifa3g01359 267 SMART h15plus2 58 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01359 267 PRINTS Histone H5 signature 180 197 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01359 267 PRINTS Histone H5 signature 74 91 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01359 267 PRINTS Histone H5 signature 47 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01359 267 PRINTS Histone H5 signature 147 161 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01359 267 Pfam linker histone H1 and H5 family 61 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01359 267 MobiDBLite consensus disorder prediction 1 65 - -
Vifa3g01359 267 MobiDBLite consensus disorder prediction 144 166 - -
Vifa3g01359 267 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 60 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01359 Vifa-Chr3 349445555 349446459 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01359 62 140 Single Myb Histone (SMH) Gene Family AT1G72740 33.750 3.70e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01359 K11275 - psat:127122354 150.214