Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01358 ATGGCTACCGAAGAACCTATTATCGCCGTTGAACCCGAGCTTGAACCAGCGACCGCCGAACCTCCAGTCTCGGAGAAAGTGGAGGAACCAAAGGCTCAAACTGAGAAGACGAAGAAAACCAAGGAATCCAAGCCTAAAAAAGCTTCCAAACCACGAAACCCTGCTTTACATCCTACTTACGAAGAGATGATTAAGGATGCAATAGTGTCGCTGAAGGAGAAGAATGGTTCAAGCCAATACGCGATTGCAAAGTTCATTGAAGAGAAGCACAAACAGCTTCCAGCCATCTTCAAGAAGCTATTGCTCCAAAATTTGAAGAAAAAAGTTGCTTCTGGAAAGCTTGTTAAGGTTAAAGGTTCGTTCAAGCTTTCTGCAGCTGCGAAAAAGCCCGCAGTCGCCAAGCCGAAGTCAAAGCCAGCTGCCAAAGTAAAGTCTGTGAAGGCTAAGCCAGCTGCCAAGGTAAAGGCTGTGAAGGCTAAGCCAGCTGCTAAGCCAAAAGCTAAAGCTGTTGTAAAAACAAAGGTTGCTTCAAAGGCAAAATCTGCTACTACCAAGCCAAAAGCTGCTGCCAAGCCTAAAACTGTTGCTAAGCCCAAGGCAAGGCCTGCAAAGGTTGCAAGGACATCGGCTAAGACTACACCAGGGAAGAAAGTTGCTGTTCCAAAAACCGCACCTAAGAAAGCAGTGGCAGCAAAGAAGGCTCCGGTGAAGAGTGTGAAGTCTCCAGCGAAGAAGGCTTCCGGGGTGAAGAGAGGGGGAAGGAAATGA 768 0.4753 MATEEPIIAVEPELEPATAEPPVSEKVEEPKAQTEKTKKTKESKPKKASKPRNPALHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKHKQLPAIFKKLLLQNLKKKVASGKLVKVKGSFKLSAAAKKPAVAKPKSKPAAKVKSVKAKPAAKVKAVKAKPAAKPKAKAVVKTKVASKAKSATTKPKAAAKPKTVAKPKARPAKVARTSAKTTPGKKVAVPKTAPKKAVAAKKAPVKSVKSPAKKASGVKRGGRK 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01358 255 PRINTS Histone H5 signature 148 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01358 255 PRINTS Histone H5 signature 187 204 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01358 255 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01358 255 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01358 255 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01358 255 MobiDBLite consensus disorder prediction 125 255 - -
Vifa3g01358 255 CDD H15 54 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01358 255 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01358 255 MobiDBLite consensus disorder prediction 140 173 - -
Vifa3g01358 255 MobiDBLite consensus disorder prediction 1 60 - -
Vifa3g01358 255 Pfam linker histone H1 and H5 family 57 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01358 255 SUPERFAMILY "Winged helix" DNA-binding domain 54 133 IPR036390 -
Vifa3g01358 255 Gene3D - 51 145 IPR036388 -
Vifa3g01358 255 PANTHER HISTONE H1 29 240 - -
Vifa3g01358 255 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01358 Vifa-Chr3 349410063 349410934 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01358 58 136 Single Myb Histone (SMH) Gene Family AT1G72740 33.750 1.77e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01358 K11275 - psat:127122354 148.673