Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01357 ATGGCCACCGAAGAACCAATTATCGTCGTTGAACCCGTGCCTGAACCAGCGACCGCCGAACCTCCGGTATCGGAGAAAGTGGAGGAACCAAAGACGAAAGCCGAGAAGACGAAGAAAACCAAGGAATCCAAGCCTAAGAAAGCTTCGAAACCACGAAACCCCGCTTCACATCCTACTTATGAAGAGATGATTAAAGATGCAATTGTATCGTTGAAGGAGAAGAATGGATCGAGTCAATATGCTATAGCAAAATTCATAGAAGAGAAACACACACAACTTCCTGGAAACTTCAAGAAGCTATTGCTTCAAAACTTGAAGAAGAACGTTTCTTCTGGAAAGCTTGCTAAGGTTAAAGCTTCATTCAAGCTTTCTGCAGCGGCTAAGAAGCCAGCAGTAGCCAAGCCGAAGGCAAAGCCAGCTGCCAAGAAGGCTGCGAAAGCTAAGCCAGTAGCTAAGCCTAAAGCTAAAGTTGTTGTTAAGCCAAAGGTTGCTTCAAAGGCAAAATCTGTTACGACCAAGCCCAAAGCCGCTGCAAAACCCAAAACTGTCATCAAGCCCAAAACTGCTACCAAGCCTAAAACTGTTGCTAAGGCGAAAGCAGCTGTGAAACCAAAGCCTGCAAAGGTTGCAAAGACATCGACAAAGACGACACCAGGGAAGAAAGTTGTTGTTGCGAAGTCTACACCTAAGAAAGCAGTGGCGGCAAAGAAAGCTCCGGTGAAGAGTGTGAAACCTAAGAGTGTTAAGTCTCTAGCCAAGAAGGCTACCGGAGTGAAGAGAGGCGGAAGGAAATGA 795 0.4616 MATEEPIIVVEPVPEPATAEPPVSEKVEEPKTKAEKTKKTKESKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKHTQLPGNFKKLLLQNLKKNVSSGKLAKVKASFKLSAAAKKPAVAKPKAKPAAKKAAKAKPVAKPKAKVVVKPKVASKAKSVTTKPKAAAKPKTVIKPKTATKPKTVAKAKAAVKPKPAKVAKTSTKTTPGKKVVVAKSTPKKAVAAKKAPVKSVKPKSVKSLAKKATGVKRGGRK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01357 264 MobiDBLite consensus disorder prediction 125 264 - -
Vifa3g01357 264 SMART h15plus2 54 120 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01357 264 Pfam linker histone H1 and H5 family 57 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01357 264 SUPERFAMILY "Winged helix" DNA-binding domain 51 130 IPR036390 -
Vifa3g01357 264 CDD H15 54 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01357 264 MobiDBLite consensus disorder prediction 1 61 - -
Vifa3g01357 264 PANTHER HISTONE H1 31 237 - -
Vifa3g01357 264 Gene3D - 52 132 IPR036388 -
Vifa3g01357 264 MobiDBLite consensus disorder prediction 135 161 - -
Vifa3g01357 264 PRINTS Histone H5 signature 181 198 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01357 264 PRINTS Histone H5 signature 142 156 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01357 264 PRINTS Histone H5 signature 70 87 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01357 264 PRINTS Histone H5 signature 43 64 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vifa3g01357 264 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 56 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vifa3g01357 264 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01357 Vifa-Chr3 349196630 349197534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01357 58 136 Single Myb Histone (SMH) Gene Family AT1G72740 33.750 6.79e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01357 K11275 - psat:127122354 127.487