LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g01357	ATGGCCACCGAAGAACCAATTATCGTCGTTGAACCCGTGCCTGAACCAGCGACCGCCGAACCTCCGGTATCGGAGAAAGTGGAGGAACCAAAGACGAAAGCCGAGAAGACGAAGAAAACCAAGGAATCCAAGCCTAAGAAAGCTTCGAAACCACGAAACCCCGCTTCACATCCTACTTATGAAGAGATGATTAAAGATGCAATTGTATCGTTGAAGGAGAAGAATGGATCGAGTCAATATGCTATAGCAAAATTCATAGAAGAGAAACACACACAACTTCCTGGAAACTTCAAGAAGCTATTGCTTCAAAACTTGAAGAAGAACGTTTCTTCTGGAAAGCTTGCTAAGGTTAAAGCTTCATTCAAGCTTTCTGCAGCGGCTAAGAAGCCAGCAGTAGCCAAGCCGAAGGCAAAGCCAGCTGCCAAGAAGGCTGCGAAAGCTAAGCCAGTAGCTAAGCCTAAAGCTAAAGTTGTTGTTAAGCCAAAGGTTGCTTCAAAGGCAAAATCTGTTACGACCAAGCCCAAAGCCGCTGCAAAACCCAAAACTGTCATCAAGCCCAAAACTGCTACCAAGCCTAAAACTGTTGCTAAGGCGAAAGCAGCTGTGAAACCAAAGCCTGCAAAGGTTGCAAAGACATCGACAAAGACGACACCAGGGAAGAAAGTTGTTGTTGCGAAGTCTACACCTAAGAAAGCAGTGGCGGCAAAGAAAGCTCCGGTGAAGAGTGTGAAACCTAAGAGTGTTAAGTCTCTAGCCAAGAAGGCTACCGGAGTGAAGAGAGGCGGAAGGAAATGA	795	0.4616	MATEEPIIVVEPVPEPATAEPPVSEKVEEPKTKAEKTKKTKESKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKHTQLPGNFKKLLLQNLKKNVSSGKLAKVKASFKLSAAAKKPAVAKPKAKPAAKKAAKAKPVAKPKAKVVVKPKVASKAKSVTTKPKAAAKPKTVIKPKTATKPKTVAKAKAAVKPKPAKVAKTSTKTTPGKKVVVAKSTPKKAVAAKKAPVKSVKPKSVKSLAKKATGVKRGGRK	264

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g01357	264	MobiDBLite	consensus disorder prediction	125	264	-	-
	Vifa3g01357	264	SMART	h15plus2	54	120	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Vifa3g01357	264	Pfam	linker histone H1 and H5 family	57	123	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Vifa3g01357	264	SUPERFAMILY	"Winged helix" DNA-binding domain	51	130	IPR036390	-
	Vifa3g01357	264	CDD	H15	54	124	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Vifa3g01357	264	MobiDBLite	consensus disorder prediction	1	61	-	-
	Vifa3g01357	264	PANTHER	HISTONE H1	31	237	-	-
	Vifa3g01357	264	Gene3D	-	52	132	IPR036388	-
	Vifa3g01357	264	MobiDBLite	consensus disorder prediction	135	161	-	-
	Vifa3g01357	264	PRINTS	Histone H5 signature	181	198	IPR005819	GO:0000786\|GO:0003677\|GO:0006334\|GO:0030527

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g01357	Vifa-Chr3	349196630	349197534	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g01357	58	136	Single Myb Histone (SMH) Gene Family	AT1G72740	33.750	6.79e-07	47.8

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g01357	K11275		-	psat:127122354	127.487

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