Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01355 ATGAGAGACATATTTGAAAAACAATCATCATCATCACCTGAAGCTTCAAATTATGCATCAAGTAGTGGCTTATCTGGGGATGATAAAGAGATTGGTTATAGAGCTGCAATTACATCAAAGCATTCATATCTTTTGGCTAAAAACTCTTATCTTCTTCATTTCTTATCCAATAAAATCGACCGAAATTTCGCTCGCATGGTAATGGCAGAGGTGATAGGTACTTTCATATTGATGTTTTGTGTATGTGGAATCATTTCAAGCACACAACACCAAAACAATGCAGTGGGTCTTCTAGAGTATGCAGCTACAGCAGGATTAACAGTTGTTGTCATAATTTTCTCAATTGGACAAATTTCTTGTGCACATGTTAATCCAGCTATCACAATAGCCTTTGCAACAATTGGTAAATTTCCATGGTTCAAGGTTCCGATTTACATAATAGCACAAACAATAGGTTCTTTGATGGCAACATATATTGGTAGCCTTGTCTATGGAATAAAATCAGATGTTATGATGACTCAACCACTCCAAGGTTGCAACTCTGCCTTCTGGGTGGAGCTTATCGCATCATTCATCATCATGTTTTTGGTTACAGCTTTGACATCTGAACCTCAATCTGTATCAGTGGGACATTTATCTGGTTTTGTTGCTGGAATTGCAATTGGGCTTGCTGTACTAATCACAGGACCTGTTTCAGGTGGATCAATGAATCCAGCAAGATCACTAGGTCCAGCAATTATGGCATGGAAATTTAAGGACATTTGGATATACATTCTAGCACCAAGTGTAGGAGCTGTGACAGGAGCACTAATGTTTCGTTTCCTACGTCTTCAAGACCAACATTGCAATTCCCCAAACACGAGGGAAGTTGGTCATCCTATACCCTTTTGTGCAAGTTAG 900 0.3878 MRDIFEKQSSSSPEASNYASSSGLSGDDKEIGYRAAITSKHSYLLAKNSYLLHFLSNKIDRNFARMVMAEVIGTFILMFCVCGIISSTQHQNNAVGLLEYAATAGLTVVVIIFSIGQISCAHVNPAITIAFATIGKFPWFKVPIYIIAQTIGSLMATYIGSLVYGIKSDVMMTQPLQGCNSAFWVELIASFIIMFLVTALTSEPQSVSVGHLSGFVAGIAIGLAVLITGPVSGGSMNPARSLGPAIMAWKFKDIWIYILAPSVGAVTGALMFRFLRLQDQHCNSPNTREVGHPIPFCAS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01355 299 ProSitePatterns MIP family signature. 122 130 IPR022357 -
Vifa3g01355 299 PANTHER AQUAPORIN NIP2-1 46 283 IPR034294 -
Vifa3g01355 299 Pfam Major intrinsic protein 62 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01355 299 Gene3D Glycerol uptake facilitator protein. 36 289 IPR023271 -
Vifa3g01355 299 PRINTS Major intrinsic protein family signature 255 275 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01355 299 PRINTS Major intrinsic protein family signature 65 84 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01355 299 PRINTS Major intrinsic protein family signature 218 240 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01355 299 PRINTS Major intrinsic protein family signature 141 160 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01355 299 PRINTS Major intrinsic protein family signature 185 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01355 299 PRINTS Major intrinsic protein family signature 104 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vifa3g01355 299 SUPERFAMILY Aquaporin-like 61 281 IPR023271 -
Vifa3g01355 299 MobiDBLite consensus disorder prediction 1 25 - -
Vifa3g01355 299 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01355 Vifa-Chr3 348896126 348897679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01355 65 280 Major Intrinsic Protein MIP AT5G37820 39.171 2.09e-51 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01355 K09874 - gmx:100817660 382.489