Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01344 ATGGGCATGCCTGAAAACATAATTGTTGGTTCTCACGTTTGGGTTGGAGATCCAGAATTAGTTTGGATTGATGGAGTAGTACTGAATATTACTGGAGAAGAAGCTGAAATTCAAACCACCAACGGAAAGAAGGTAGTTTCCCGTTTGTCAAAATTACATCCCAAGGATACAGACGCTCCTATAGACGGAGTTGATGATATGACCAAGCTTGCTTATTTGCATGAGCCAGGAGTGCTGTATAATTTGGAAACTCGATACAAGATCAATGAAATATATACTTATTCTGGAAATATTCTTATTGCGATCAATCCCTTTCAAAGTCTTCCACACCTGTATGATGCTAGTGTAATGAAAAGATACAAGGGAGAGAAAATGGGAAGTTTAAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCTATGATTACTGAGGAGAAGAGCAACTCTATTCTGGTTAGTGGTGAGAGTGGTGCTGGTAAGACAGAAACGACCAAAATGCTTATGCTTTACTTGGCATATTTGGGAGGTCATACTGCATCGGAAGGACGGACTGTTGAGCAACAAGTTCTAGAATCTAACCCAGTTCTTGAAGCATTTGGTAATGCCAAAACAGTTAGAAATGACAATTCCAGCCGCTTTGGAAAATTTGTTGAGATTCAATTTGATAAGTATGGACGAATATCCGGTGCAGCTATTAGAACTTATCTGCTCGAGAAGTCTCGTGTTTGCCAAATCTCAGATCCAGAGCGTAATTATCATTGTTTCTACCTTCTCTGTGCTTCTCCTCCTGAGGAAAAGGAGAAATATAAGTTGGGAGATCCAAGATCATTTCATTACCTAAATCAATCCAATTGCTATGAATTAGCTGGTGTTAATGCTGCTCAAGAGTATCTTAGCACCAAAAGAGCCATGGATATTGTGGGAATCAGTCAAGAGGAACAGGATGCAATTTTCAGACTTGTTGCTGCTATTCTCCATCTTGGAAACATTAGATTTTCAAAATCTGAAGAAGATTCATCAGTTCTAGCAGATGAAGACTCCATGTTCCATCTCCAAACAACCGCAGAACTTCTAATGTGTGATCCTAATGCTGTGGAAGTTGCACTTTGTAAGCGTGTGATGATCACCCCAGAAGAAATCATCGAAAGAAGTCTTGATCCTCTTGCTGCAACAGTTAGCAGAGATGGTTTGGCCAAGACATTATATTCTCGTTTATTTGATTGGTTAGTCCAGAAAATTAATCTCTCCATTGGGCAGGATCCTAACTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAGAGCTTTCAAACTAATAGTTTTGAGCAGTTTTGTATTAATTTTACGAATGAAAAGCTGCAGCAGCACTTCAACCAGCACGTCTTTAAGATGGAGCAAGAGGAATACACAAAAGAAGGGATTGAATGGAGCTACTTAGAGTTTGTAGATAATCAAGATGTACTAGATCTCATTGAAAAGAAACCCGGTGGAGTAGTTGCTCTGCTTGATGAGGCTTGCATGTTTCCCAAATCAACTCATGAAACATTTTCACAAAAGCTTTATCAGACATTCAAAGATCACAAACGCTTCATCAAACCAAAATTGGCACGCTCAGACTTCACTATAGTTCATTATGCAGGGGAGGTCAAGTATCAATCTCAGCACTTCATAGACAAAAACAAAGACTATGTTGTTCCCGAACATCAAGACATGCTAAGTACTTCTAAATGTTCATTTGTATCAGGCCTTTTTCCTCCACTCTCTGAGGAGACAGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTTAAGCTACAACTACAACATTTGATGGAAGCGCTCAATCTGACAGAGCCCCACTATATTAGATGCGTGAAGCCAAATAGTCAATTAAAACCCGGAATATTTGAGAATATGAATGTCATGCATCAATTACGTTCTGGTGGTGTTCTTGAAGCAGTGAGGATTAAATGTGCTGGATTCCCCACTCACAGGACCTTTCAGGAATTTTTAACTCGCCTAGGCGTTCTTGCTCCAGAGATCCTTCACGGAAATTTCGAAGAAATGGAATCATGTAAAAAGATTTTAGAGAAGGTTGGGCTGACAGGTTATCAGATAGGTAAAACAAAAATATTCCTAAGAGCTGGTCATATGGCAGAATTGGATGCTCGGAGAGCATACATGCTTAGCCATTCTGCAACAATTATCCAAAAGCAGACTAAAACTTATTTTAGCCGGAAAACATATATTACACTGCGAAAGTCCTCTATCTTTGTGCAATCTATTTGCAGAGGAGAACTGGCACGAAGTCAATATTATCACATGAAGAGGAAAGCAGCTGCCATCAAAATTCAAACCAAATCACGTGGAAGATTTGCCAGAAAATGCTACTTTGAATTAAGGATTTCTGCCATTGTCTTACAGACAGGTTTTCGGGCTATGGCTGCTCGACATGCTCGTGATAAATTGAGATATAGAAAGCAAACTGGGGCATCAACTATTATCCAGTCCTATTGGCGGCGACATAAAGCTCTCATTGACTATCAGAACCTAAAGAAAGCGTCAGTCATTTCACAAAGTGTCAATCACTCCAGCGATGAATGTGAACAGAAGATTGCGGAGATATCACCGGAAAATGAAAGTCCTTCCGTGGAAAAATCTTCAAATTTATTACATGAAGAATCCTCAAGTTCTTTCCAAGATAATGAAAGCATTGAAGCTATCAGGGTTTTCTCTAATCCCCTCAAAGATTCTGAAAGCAATGAAGCTATCAGGGTTTTCTCTAATCCCCTCAAAGATTCTGAAAGCAATGAAGCTAGTATCGATATCTCTAGTCCCCTACGAGACACTGAAAGCAATGAAGCTATTAGGGATTTATCTAGTCCCCTCAGAGACACTGAAAGCAACGATGCTATTAGGGATTTATCTAGTCCTCTCAGAGACACTGAAAGCAATGAAGCTATTACTGATTTATCTAGTTCCCTCAGAGACACTGAAAAGATTGAGGTTCTTTCTGCAGAAATAAAAAATTTAAAGGTCATGTTGAAGGAAGAAAAACAAAAATCTGATGAATATGAAAGGAAATATGTAGAAGCTCAAGGATCTAGCGAAGAGTTACGCAAAAAGTTAGCCGAAACCGAAAAAAGAGTATATCAGCTTCAGGATTCATTGAACAGGATGATATCTTCCATGTCAAGTCAAGTTGCCGAGCTGAAGACGATCTTAAGTACTTCATCAAGGTTGAGTTCAACTTTTCGGCCTATTGCTAGAGTTGATGTTGCTTCCAGTAACTCTGATACTTCATCTACAGACTCTGATTTCACATTTCCTGCCCCCATTTCAAATCCAGAACCAGTCTCTTCTGCCGACTCAAACTCTTTTCAACTAGTAGTTCAGGATATCACTGCCGGTGAAGAATCAGGATCTGAAAGTGAAAAAGAAGGTTCGTTTGATGATTTCTTTTAG 3480 0.3937 MGMPENIIVGSHVWVGDPELVWIDGVVLNITGEEAEIQTTNGKKVVSRLSKLHPKDTDAPIDGVDDMTKLAYLHEPGVLYNLETRYKINEIYTYSGNILIAINPFQSLPHLYDASVMKRYKGEKMGSLSPHVFAIAEAAYRAMITEEKSNSILVSGESGAGKTETTKMLMLYLAYLGGHTASEGRTVEQQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSNCYELAGVNAAQEYLSTKRAMDIVGISQEEQDAIFRLVAAILHLGNIRFSKSEEDSSVLADEDSMFHLQTTAELLMCDPNAVEVALCKRVMITPEEIIERSLDPLAATVSRDGLAKTLYSRLFDWLVQKINLSIGQDPNSKCLIGVLDIYGFESFQTNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEGIEWSYLEFVDNQDVLDLIEKKPGGVVALLDEACMFPKSTHETFSQKLYQTFKDHKRFIKPKLARSDFTIVHYAGEVKYQSQHFIDKNKDYVVPEHQDMLSTSKCSFVSGLFPPLSEETAKSAKFSSIGSRFKLQLQHLMEALNLTEPHYIRCVKPNSQLKPGIFENMNVMHQLRSGGVLEAVRIKCAGFPTHRTFQEFLTRLGVLAPEILHGNFEEMESCKKILEKVGLTGYQIGKTKIFLRAGHMAELDARRAYMLSHSATIIQKQTKTYFSRKTYITLRKSSIFVQSICRGELARSQYYHMKRKAAAIKIQTKSRGRFARKCYFELRISAIVLQTGFRAMAARHARDKLRYRKQTGASTIIQSYWRRHKALIDYQNLKKASVISQSVNHSSDECEQKIAEISPENESPSVEKSSNLLHEESSSSFQDNESIEAIRVFSNPLKDSESNEAIRVFSNPLKDSESNEASIDISSPLRDTESNEAIRDLSSPLRDTESNDAIRDLSSPLRDTESNEAITDLSSSLRDTEKIEVLSAEIKNLKVMLKEEKQKSDEYERKYVEAQGSSEELRKKLAETEKRVYQLQDSLNRMISSMSSQVAELKTILSTSSRLSSTFRPIARVDVASSNSDTSSTDSDFTFPAPISNPEPVSSADSNSFQLVVQDITAGEESGSESEKEGSFDDFF 1159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01344 1159 ProSiteProfiles IQ motif profile. 782 806 IPR000048 GO:0005515
Vifa3g01344 1159 MobiDBLite consensus disorder prediction 940 955 - -
Vifa3g01344 1159 Gene3D - 979 1094 - -
Vifa3g01344 1159 PANTHER MYOSIN 54 1067 - -
Vifa3g01344 1159 MobiDBLite consensus disorder prediction 1099 1159 - -
Vifa3g01344 1159 Gene3D Kinesin motor domain 65 661 IPR036961 -
Vifa3g01344 1159 ProSiteProfiles Myosin motor domain profile. 62 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01344 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 784 IPR027417 -
Vifa3g01344 1159 Pfam Myosin head (motor domain) 64 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01344 1159 Pfam IQ calmodulin-binding motif 758 777 IPR000048 GO:0005515
Vifa3g01344 1159 Pfam IQ calmodulin-binding motif 836 849 IPR000048 GO:0005515
Vifa3g01344 1159 Pfam IQ calmodulin-binding motif 784 802 IPR000048 GO:0005515
Vifa3g01344 1159 Coils Coil 1006 1061 - -
Vifa3g01344 1159 FunFam Myosin heavy chain 252 307 - -
Vifa3g01344 1159 MobiDBLite consensus disorder prediction 956 985 - -
Vifa3g01344 1159 Pfam Myosin N-terminal SH3-like domain 9 46 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa3g01344 1159 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Vifa3g01344 1159 FunFam Class V myosin 438 581 - -
Vifa3g01344 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 784 865 IPR027417 -
Vifa3g01344 1159 SMART iq_5 804 826 IPR000048 GO:0005515
Vifa3g01344 1159 SMART iq_5 832 854 IPR000048 GO:0005515
Vifa3g01344 1159 SMART iq_5 733 755 IPR000048 GO:0005515
Vifa3g01344 1159 SMART iq_5 781 803 IPR000048 GO:0005515
Vifa3g01344 1159 SMART iq_5 756 778 IPR000048 GO:0005515
Vifa3g01344 1159 MobiDBLite consensus disorder prediction 881 904 - -
Vifa3g01344 1159 Gene3D - 784 834 - -
Vifa3g01344 1159 Gene3D - 733 783 - -
Vifa3g01344 1159 Gene3D - 665 732 - -
Vifa3g01344 1159 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa3g01344 1159 MobiDBLite consensus disorder prediction 940 991 - -
Vifa3g01344 1159 Gene3D Myosin VI head, motor domain, U50 subdomain 312 600 - -
Vifa3g01344 1159 PRINTS Myosin heavy chain signature 481 509 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01344 1159 PRINTS Myosin heavy chain signature 428 456 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01344 1159 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01344 1159 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01344 1159 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01344 1159 MobiDBLite consensus disorder prediction 1144 1159 - -
Vifa3g01344 1159 MobiDBLite consensus disorder prediction 1099 1143 - -
Vifa3g01344 1159 Gene3D - 252 310 - -
Vifa3g01344 1159 CDD MYSc_Myo11 76 719 IPR036018 -
Vifa3g01344 1159 SMART MYSc_2a 56 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g01344 1159 Gene3D - 438 622 - -
Vifa3g01344 1159 MobiDBLite consensus disorder prediction 880 904 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01344 Vifa-Chr3 343735312 343751880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01344 1 1065 Myosins gene family AT1G54560 60.862 0.0 1380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01344 K10357 - gmx:100803485 1579.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01344 3 343735312 343751880 Vifa3g01344 3 343735312 343751880 ECH