Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01343 ATGGAAGGAAACTATTTGAACAGAAACACAACAACTACTCATAGAGATCATCATCATCACCATCATGGATATGAGGAACACTCATGGGGAACATCATGGCCTGCAAGAAACTATGCCTGTAGCTTTTGCAAAAGAGAGTTTAGATCAGCTCAAGCTTTAGGTGGACACATGAATGTTCATAGAAGAGATAGGGCAAGGTTAAGATCATCGTTAATATCTTCTTGGGTTAATTCTGATCAATGCCCTAATAGTAATAATAATAAACCTAACCCTACCACTCCTTCATCTAATGATGAGATTTTCAGTTCTTCACATTATCTCTCTTTATCTTCTTCCTCTTCTTCACCTTCCTTACCTCATACTAGCCATGATGACAAGAAACCTAGACTCACACCTTCTCTATCTCTTCCTCTTTTGAATCCTCAACGAAGTGGAATCATGAAAAGCTATCAAGATGTGAAGAAGCACAATGTTTTGATGAATAATGAGCAAAACATTACATTGGAGTTAGGAATAGGGTTGTTTAAACACCATGAAGAGAAGTTAGATTTGGAGCTTCGACTTTAA 567 0.3721 MEGNYLNRNTTTTHRDHHHHHHGYEEHSWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLISSWVNSDQCPNSNNNKPNPTTPSSNDEIFSSSHYLSLSSSSSSPSLPHTSHDDKKPRLTPSLSLPLLNPQRSGIMKSYQDVKKHNVLMNNEQNITLELGIGLFKHHEEKLDLELRL 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01343 188 SUPERFAMILY beta-beta-alpha zinc fingers 35 64 IPR036236 -
Vifa3g01343 188 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Vifa3g01343 188 PANTHER OS07G0101800 PROTEIN 19 188 - -
Vifa3g01343 188 MobiDBLite consensus disorder prediction 76 119 - -
Vifa3g01343 188 MobiDBLite consensus disorder prediction 1 29 - -
Vifa3g01343 188 Pfam C2H2-type zinc finger 38 62 - -
Vifa3g01343 188 MobiDBLite consensus disorder prediction 76 140 - -
Vifa3g01343 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Vifa3g01343 188 SMART c2h2final6 38 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01343 Vifa-Chr3 343663797 343664363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01343 26 188 C2H2 Transcription Factor Family AT3G23130 40.000 4.47e-24 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01343 - - mtr:25484309 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01343 3 343663797 343664363 Vifa3g01343 3 343663797 343664363 ECH