Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01342 ATGGAATTCAGCTACCTCCAAGAAGATTCAAAGAGCTCGAGCGACGAAAACATCGACCGATCATCCGATCATGATGATCATGACATGGGAATTGGTAGATCCTATGAGTGTGTGTTTTGCAAAAGAGGTTTCACAACTGCTCAAGCTTTAGGTGGACACATGAACATACATAGAAAAGATAGAGCAAACAATAACAAAAGTGTCACTAAAACAAATTTCATTCCACCTAGTTCAAGCAAATTAGTACTTGATCATCATCATCATGATAGCTATGGAGATCTTGGATTTTACTCAACAATTAATCCAACTCATGGTTATTATTCTTCTTCAATTTCATCCAAAACTACTACTCCTGAGGTAGATTCTCTTAACTATCATCAACTATATTTTCCTTCACATCATGTGCAATATAGTGAGATGCTTTGTGTTGAAAATCAAAGAATGTTTGGATCACAAGATTGGAGGGGTTTGAGCTTGTATACAAATCCATTGATTAAAGACAAGATAGAAAACAACAATGAAGTGGATGAATTGGATTTGGAGCTTAGACTTGGTCATTATCCATAG 567 0.358 MEFSYLQEDSKSSSDENIDRSSDHDDHDMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNNKSVTKTNFIPPSSSKLVLDHHHHDSYGDLGFYSTINPTHGYYSSSISSKTTTPEVDSLNYHQLYFPSHHVQYSEMLCVENQRMFGSQDWRGLSLYTNPLIKDKIENNNEVDELDLELRLGHYP 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01342 188 Pfam C2H2-type zinc finger 35 59 - -
Vifa3g01342 188 Gene3D Classic Zinc Finger 9 87 - -
Vifa3g01342 188 MobiDBLite consensus disorder prediction 1 27 - -
Vifa3g01342 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Vifa3g01342 188 SUPERFAMILY beta-beta-alpha zinc fingers 33 61 IPR036236 -
Vifa3g01342 188 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Vifa3g01342 188 PANTHER OS07G0101800 PROTEIN 11 186 - -
Vifa3g01342 188 MobiDBLite consensus disorder prediction 12 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01342 Vifa-Chr3 342923023 342923589 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01342 33 188 C2H2 Transcription Factor Family AT4G17810 32.278 1.17e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g01342 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01342 - - ccaj:109812060 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01342 3 342923023 342923589 Vifa3g01342 3 342923023 342923589 ECH