Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01335 ATGGCTTCTTCAAATGGCTTTGGCTCTAGCACTAGCTCTTCAGGATCACCATGTGGGGCATGCAAGTTTCTCCGTAGAAAGTGTACATCTGAATGCATATTTGCACCTTATTTTTGCTGTGAAGAAGGACCTAATAGATTTGCAGCTATTCATAAAGTGTTTGGTGCTAGCAACGTTTCTAAGATGCTCTTGCATATACCTCCTCAAGATCGTTATGATGCTGTTGTCACAATTGCTTATGAAGCTCGAGCTCGTATTATAGATCCAGTTTTTGGTTGCGTCTCCCATATTTTTGCTTTGCAGCAACAGGTAACAAGCTTGCAAGCACAACTGATGCAAGTGAAGGCATGTCTGAGTCAAAACATAGAAGAGTCAAAGAACATGGGGAATCAGTGGTCAGGGAATGTTGCTAAACAACAGTTAATCAATCCAATTTGTGCCACTAACATGAACCCTATATCTCCTAAGAGTTCGCTTGAGTCGATTGATTATAGCAGCTGCAGCATCAGTGATAGAATGAGCATGCAAGACATACAAAGAAATAGAGAGGGTTTCACTTTCTCATTCCAAGCTTGTTCTAAGAAAAATAATAATTTGACTGAGCTTCAAGAACTGGCTCTCAGAATGGCAGGGAACTAA 639 0.4069 MASSNGFGSSTSSSGSPCGACKFLRRKCTSECIFAPYFCCEEGPNRFAAIHKVFGASNVSKMLLHIPPQDRYDAVVTIAYEARARIIDPVFGCVSHIFALQQQVTSLQAQLMQVKACLSQNIEESKNMGNQWSGNVAKQQLINPICATNMNPISPKSSLESIDYSSCSISDRMSMQDIQRNREGFTFSFQACSKKNNNLTELQELALRMAGN 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01335 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 181 - -
Vifa3g01335 212 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Vifa3g01335 212 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01335 Vifa-Chr3 341917499 341918444 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01335 1 212 AS2 family AT2G42430 45.850 1.95e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa3g01335 LOB 2.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01335 K13944 - gmx:100801508 266.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02658 5 884194663 884195838 Vifa3g01335 3 341917499 341918444 PCT