Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01333 ATGGCTGGTTCTAGTTCTGTTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTATTAGAGGTTGTGTTTTTGCACCTTACTTTAGTCATGAACAAGGTGCTACACATTTTGCAGCCATTCATAAGGTTTTCGGTGCAAGCAATGTCTCAAAGCTTCTTGCTCAAATCCCTGTAAGTGATCGATGCGAAGCCGCGGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGATGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTGGTTAACTTGCAAACACAACTGGCTTATCTCAAAGAACAAGCAGCACAGACTAGTCTCAACAATTCATCTAACAATGAAAACCCTAATGAAAAGTCAACACCTCATACTCTTCCTCAAGATCTTCAAAGTTTGTTCCATGTTGAAAACTCCAATAATTACTACCAGCATGGACAAGAATTCCTTACTAATAACATGTCTAATATTTCACTAACAACACATTGTTATGGTAATAATAACCCCATGGATCTAAACCCTATGAGGAATTATGAAAACTCAAGAGTCATGGAAGAAAACAGTTCATCATTTTCTAGCTTTGAGGAGAGTACATCTAATTCTATATCTTATGACATGCAAACAAATAGGAGGACATGGGGCTTTGATGATGTTGAGGACCTACATTCAGTGGCTTTTGGATATAGTTGA 717 0.3808 MAGSSSVSGSPCGACKFLRRKCIRGCVFAPYFSHEQGATHFAAIHKVFGASNVSKLLAQIPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQLAYLKEQAAQTSLNNSSNNENPNEKSTPHTLPQDLQSLFHVENSNNYYQHGQEFLTNNMSNISLTTHCYGNNNPMDLNPMRNYENSRVMEENSSSFSSFEESTSNSISYDMQTNRRTWGFDDVEDLHSVAFGYS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01333 238 MobiDBLite consensus disorder prediction 116 135 - -
Vifa3g01333 238 Coils Coil 91 111 - -
Vifa3g01333 238 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Vifa3g01333 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 8 202 - -
Vifa3g01333 238 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01333 Vifa-Chr3 341375104 341375982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01333 11 237 AS2 family AT3G58190 51.316 1.63e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa3g01333 LOB 3.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01333 K13945 - gmx:100776678 305.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01333 3 341375104 341375982 Vifa3g01333 3 341375104 341375982 ECH
Vifa5g02660 5 885298983 885300097 Vifa3g01333 3 341375104 341375982 PCT