Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01327 ATGGGTGCCAATTTACATCAACTACTAAGAAGTCTCTGTTTGGATACTGATTGGAAGTATGCTATCTTTTGGAAGCTACGACACTGTGCTAGGATGATCTTGACATGGGAGGATGCTTACTATGACAATCTTGATAATTGTGATTCTTCGCAAAGTATGTACTGCCAGAAGAACCTGGATCAGATCTGTGGCGAGAACTTTTCAAACAACCCTCTAGGATTATCGGTGGTAAAGATGTCATATCATGTATATTCCTTAGGGGAAGGTATTGTTGGACAAGTAGCTGTTAATGGAAAGCATCAGTGGATCTTTGCAGATAATCAAGTTACATGTTCTGGCCCATCTTATAAGCTTGTTGATGAATGGCAATCTCAGTTTTCTGCTGGAATCAGGACAATTGTTGTTGTAGCAGTAGTCCCACTTGGAGTTGTTCAACTCGGCTCTTTATATAAAGTTAGTGAAGACATCGAGTTTGTAACTCATACCAGAAGTCTCTTTTTGTCTACTCGTGATCAAACATTTGGTTATCTTCCTAGTCAAGTCCAAAGTGTGAAACATGACACGGAGAAAACAATGATGGGTGAAACACCGGATAGGTTAATGCCCTTCCAATGTCCTGGGAAGAACTACTCACCTCCTACTGTTTATCAGAAAATGACTGTTGATGCCAGGCACAGAGGGCTTGAAATTAACTGCGATCAAAGTTCCGTTTTGCTTCAGTCAATGTCAAATATGATGACTGCAGAGAATCAGAAACTAGAAGGTGTGAAACCTTCAAACGAAAGGAACAATAATAGCTTCAAAGATACTAGTTTGAAATCAGACAAAAATGTCTCATCAGTTTTACACAGTTCAGTTATGGATAATAATAGTATTGGTGCCAATGTTTTAGTAAGTCCATACGTTAGAGCTGATACTGAGATGTCAACATTTCAGACCGAGTCTTGTTGCGAGGATATCTCGTACTCGTTGAAATTTCCTGCTGGCTATGAGCTACACGAAGCACTTGGACCAGGTTTTCTGAAAGAGAGTAAATATTTTGACTGGGCAGTACAGGGAAATCAAGATGGTAAAGATGCTGAGATGTCGGATGAGTTTAGCTGCAGCCAGTTGACTTGTGAATCACGTCCGGAGCATCTTTTGGAAGCAGTGGTGACCAAAGTTTGCCGTAGTAATAATACTGTTGATAACGAGTTTTCATTTTCTACATCAGTTCATGATGCAATGGTCTTTGGAAGAAATCCCGAAGTTCCTATTCATAATGTCCGCCCTATTAATTCAGAAGGCTATTCAATTGATCAACCATCTCATGTTAAAGAGAACAAGCATAATCGTAGTTTGAGTTCATCAGGAATATGCGGTGTGATATCCCCCAAAAGCTTTTCTTCTGCATGTCCTAGTTCGTGTAGTAACCAGTTTGAGAGGTCTTCGGAACCATCTAAAAACAGCAAAAAGAGGGCTAGGCCTGGCGAGAGTTGTAGGCCTAGACCAAGGGACAGACAACTTATCCAAGACCGTATTAAGGAGTTACGAGAACTGGTGCCAAATGGAGCTAAGTGCAGTATTGATTCACTTTTGGAGTGCACAATAAAGCATATGCTCTTTCTCCAAAGCATAACTAAGCATGCCGATAAGCTAAATAAATTCTCTGAAACAAAGACAAAGTTGCATGATCACATGGAAAAAGACATTCATGGATCCTCTGGTTATCAACAGGGTTCAAGTTGGGCAATGGAGGTAGGAGGCCATCTGAAGGTTCATTCAATATTAGTAGAAAATCTTAGCAAGAACGGACAGATGCTTGTTGAGATGCTATGTGAAGAGTGCAGCCATTTTCTTGAGATAGCAGAAGCCATGAGAAGCTTGGGCCTGAAAATTTTAAACGGCGTAACTGAAACTCGTGGTGAGAAGACATGCATATCTTTTGTGGTCGAGGGACAAAACAACAGAAATCTACATAGATTGGATATCCTATGGCCCCTTGTTCAAATATTGCAGTCAAAGAACACAGTGAATGCATGA 2022 0.405 MGANLHQLLRSLCLDTDWKYAIFWKLRHCARMILTWEDAYYDNLDNCDSSQSMYCQKNLDQICGENFSNNPLGLSVVKMSYHVYSLGEGIVGQVAVNGKHQWIFADNQVTCSGPSYKLVDEWQSQFSAGIRTIVVVAVVPLGVVQLGSLYKVSEDIEFVTHTRSLFLSTRDQTFGYLPSQVQSVKHDTEKTMMGETPDRLMPFQCPGKNYSPPTVYQKMTVDARHRGLEINCDQSSVLLQSMSNMMTAENQKLEGVKPSNERNNNSFKDTSLKSDKNVSSVLHSSVMDNNSIGANVLVSPYVRADTEMSTFQTESCCEDISYSLKFPAGYELHEALGPGFLKESKYFDWAVQGNQDGKDAEMSDEFSCSQLTCESRPEHLLEAVVTKVCRSNNTVDNEFSFSTSVHDAMVFGRNPEVPIHNVRPINSEGYSIDQPSHVKENKHNRSLSSSGICGVISPKSFSSACPSSCSNQFERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLECTIKHMLFLQSITKHADKLNKFSETKTKLHDHMEKDIHGSSGYQQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAEAMRSLGLKILNGVTETRGEKTCISFVVEGQNNRNLHRLDILWPLVQILQSKNTVNA 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01327 673 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 487 536 IPR011598 GO:0046983
Vifa3g01327 673 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 204 670 IPR043561 GO:0003700|GO:0006355
Vifa3g01327 673 MobiDBLite consensus disorder prediction 472 500 - -
Vifa3g01327 673 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 166 IPR025610 -
Vifa3g01327 673 MobiDBLite consensus disorder prediction 478 500 - -
Vifa3g01327 673 MobiDBLite consensus disorder prediction 252 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01327 Vifa-Chr3 339501550 339505264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01327 222 668 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 43.478 1.29e-87 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01327 - - cam:101504684 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01327 3 339501550 339505264 Vifa3g01327 3 339501550 339505264 ECH
Vifa5g02664 5 886562172 886571423 Vifa3g01327 3 339501550 339505264 PCT