LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g01326	ATGAGAAATTCTTCAGAAACACCTTCTCCATCCTCATACAAGGCCAGATCCAAAAAGCCCCTACTTCGAAGCTCCAAAGCTCTATTCAAAGATCCCATCGATGAACTAAGCACCAAGACTCCAGAGAAGCTCCCTCAGCGCACTCGCAACCGCGGCGTTGCGCTTTCTTTATCAGATATTAGGAAAGTCACTAAGGGTCTTCATGATCAGAAACAGCCCCATGAAACGATGCCGTCTAAGGGGAGAACCGCTAGAAGGCTAATCTCACCGGCTTCCCCGCTAAAGAGCAGTAAATCAGCTGATGGTTTATTCAAGCTTCCTGAAAAATATGAAAATTTGGGCGAGTTTTTTGATAGCTTGGATAGTTCGATTCGGTTGTTGCGATTGAAAGGGGCGATGACTTCGTTCACTAATATCAGGCCAAAGATTGAAACTTTAACTGATCGGAGGTTTACATATGGTCATTTGGCTCAGTTGAAGTTTATCTTACCTGAGGCAATTGCTATTAAGAAGTTATTGGTATTTGATGAAAGAACTAGTTGTATGAAGCCGGATCTTCATGTTGCTATAAACCCTGATGCAGTAGAGTTTGATGCTAAGCTGTTATCTGAATCTGGGACTATGTCTCTGAGGAAGTTATTTCGTGTACGGCTCAAAGATTTTTGGGAATCTCATCCAAAGGGTGATGAAATTCCAGAGGAAATACTGCCTGAGCCATTCAGTCGCCCAAAGCAAGATCCTCCTTTACACATCTTCAAAACTCCATTAACATTCTCTGCAGTGAAATTGTCAACTAGTGACAATGCAGTTAATACAGACCCTGATGTCTCATTGCCAAATGATACATCATTTGAAACTCTTAACCAGCAGCCAGCACTTGCCTCTCATATGCCTCAATCTTTCAGAAGACGGTTTTCTCAGAGAGTGAAGGAAAGTGTACACCCAAAGTTACCATCAGATTCCTTCCAACCTTCGGCTGTCACATCTACAGAGTCAAGCTTGAAGATAAATTCCGCATCCGGTGTCTCTTTATCCCATCAGAAGACATCCCCATCTGAGCTTATTTCAGAAGCACCCAGCAGTGAAGCTTGTCCTACACCATCCATTGCTATCCCAGCTACACCTAGTAAAACCATCGAGGGTACAGATGGCAAAGGTGAATCTGTCAAAAGTGTTGAAGCTATGTCAACCCCATTAAGATGTCTGTCAACTCCAATTAGGCTGATGTCAGCCACTCCTGCGTTGAAGCCACCTAAAAGGTGTTTAATGACCCCGGAAAACAACTCTACAAGCTCACCAGACAAGTTGGTTAAGCGCCCACCTCGATCAAGGTCATTGAAATTTGACACTCCAGTGAAAAATGAAAATGATGCTAGCAGTTTGTCAACTGTTGATGACATTTTTGATATCCTACCAGATACTCTTCTCCATTCGATTAGGGAAAAAGAAATAATGGCAATAGAGGAACGGGATCCAGCTATTTCACAAGCTAAGAAACGCAAGAAAATTATTGCCAGTCTTCCCAAGCTCTTCAACATGATTCACATGATGTTTCAATCGAGAAACCGGTCTGTAATCACAAAAGATGAGCTGATAAACACGTTAATCTCAAGCCACTCTGATATTGTTGATAGAAGAGAAGTTGAAGAACAGTTCCATCTGTTGTTAGAATTAGTTCCTGAATGGATTTCTGAGAGGTTGGCTTCTAGTGGAACTATGCTGCTAGTCTCTGTAAATAAAATGTTGAGCCCTGAATCAATAAGAGCATCACTTGAAGAAGCAAAATGA	1788	0.4211	MRNSSETPSPSSYKARSKKPLLRSSKALFKDPIDELSTKTPEKLPQRTRNRGVALSLSDIRKVTKGLHDQKQPHETMPSKGRTARRLISPASPLKSSKSADGLFKLPEKYENLGEFFDSLDSSIRLLRLKGAMTSFTNIRPKIETLTDRRFTYGHLAQLKFILPEAIAIKKLLVFDERTSCMKPDLHVAINPDAVEFDAKLLSESGTMSLRKLFRVRLKDFWESHPKGDEIPEEILPEPFSRPKQDPPLHIFKTPLTFSAVKLSTSDNAVNTDPDVSLPNDTSFETLNQQPALASHMPQSFRRRFSQRVKESVHPKLPSDSFQPSAVTSTESSLKINSASGVSLSHQKTSPSELISEAPSSEACPTPSIAIPATPSKTIEGTDGKGESVKSVEAMSTPLRCLSTPIRLMSATPALKPPKRCLMTPENNSTSSPDKLVKRPPRSRSLKFDTPVKNENDASSLSTVDDIFDILPDTLLHSIREKEIMAIEERDPAISQAKKRKKIIASLPKLFNMIHMMFQSRNRSVITKDELINTLISSHSDIVDRREVEEQFHLLLELVPEWISERLASSGTMLLVSVNKMLSPESIRASLEEAK	595

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g01326	595	Pfam	DNA replication factor Cdt1 C-terminal domain	475	566	IPR032054	-
	Vifa3g01326	595	SUPERFAMILY	"Winged helix" DNA-binding domain	104	240	IPR036390	-
	Vifa3g01326	595	MobiDBLite	consensus disorder prediction	65	81	-	-
	Vifa3g01326	595	CDD	Cdt1_m	93	263	IPR014939	-
	Vifa3g01326	595	Pfam	DNA replication factor CDT1 like	106	211	IPR014939	-
	Vifa3g01326	595	PANTHER	DNA REPLICATION FACTOR CDT1	17	595	IPR045173	GO:0003677\|GO:0030174\|GO:0071163
	Vifa3g01326	595	FunFam	CDT1-like protein a chloroplastic	464	595	-	-
	Vifa3g01326	595	MobiDBLite	consensus disorder prediction	1	51	-	-
	Vifa3g01326	595	MobiDBLite	consensus disorder prediction	416	457	-	-
	Vifa3g01326	595	CDD	Cdt1_c	470	592	IPR032054	-
	Vifa3g01326	595	MobiDBLite	consensus disorder prediction	24	46	-	-
	Vifa3g01326	595	Gene3D	-	462	595	IPR038090	-
	Vifa3g01326	595	MobiDBLite	consensus disorder prediction	357	388	-	-
	Vifa3g01326	595	MobiDBLite	consensus disorder prediction	65	85	-	-
	Vifa3g01326	595	MobiDBLite	consensus disorder prediction	437	451	-	-
	Vifa3g01326	595	MobiDBLite	consensus disorder prediction	308	328	-	-
	Vifa3g01326	595	SMART	CDT1_2	106	238	IPR014939	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g01326	Vifa-Chr3	339356563	339359611	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g01326	396	593	Core DNA Replication Machinery Family	AT2G31270	49.296	9.20e-48	174

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g01326	K10727		-	cave:132166775	548.895