Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01324 ATGAGTTCTTCAGAGATTCCATCGAAAACCCCCCAATTTCCAAGTTCCGAATCTCTATTCAAAGATCCCATTGAAGAACTAAGCTCAAAGATGCCGCAACACACTTGCAAACGTGGAGTCGCACTTTTGTTGAAGGGCGAAACTGCTAGAAGGAAAATTGAATTTTCGTCTCCGCGGAAGATTAGTAAATTGGCTGACAAATCATTGGAGCTTCCTGAAAAGTATGAAAATTTGGGTGAGTTTTTCAATAGCTTGGATAGTTCGATTCGACTGTTGCGATTGAAAGGGGAAATGACTTCGTTCACTAATATCAGGCCAAAGATTGAAACTTTAACTAAGAGGAGGTTTACATATGGTCATTTGGCTCAATTAAAGTTTATATTACCTGAGGCAATTGCTATTAAGGAGATATTAGTGTATGATACAAGAACGAGTTGCATGAAGCCGGATTTTCATGTTACTATAAACTCTGATGCAGTAGAGTTTGATGCCAAGTTGATATCTGAACCTGGGACTATGTCTATGAGGAAGTTATTTCGTGCAAGGCTCAAAGATTTTTGGGAATCTCATCCAAAGGATGATGAAATTCCAGAGGAAATACTGCCCGAGCCATTCAATCACCCAAAACAAGAGCCTATGTTTAAAACTCCCTCAATATTCTCCGCAGCGACATTGTCAACTAGTGACAATGCTGTTAATATAGACCCTGATGTCTCAGTGCCCAATGAGACATCACTTGAGGCTCTTTACCAGCAGCCAGCACTTGCCGCCTCTCATATGCCTCAATCTTTTAGAAAACGGTTTTCTCAAAGAGTGAAGGAAAATGTTCCCACAAAATTTCCATCAGATTCCTTCCAACCTTCAGCTGTCCCATTATCAGAGTTACGCATGAAGATAAATTCCACTTCCGAGGTCACTTTATCTCATCAGATAACTTCTCCAACTGAGTTGGTTTTAGAAGCACCCAGTAGTGAAGCATGTTCATCCAGGGTTACCCCAGCTACACCTAGTAAAACCATTGAGTGTTCTGAAATCAAAGTTGTATCTGTTGAAAGAGTTGAAGATATGTCAACTCCATTGAGATTTGTGTCAACTCCATCCAGGCTGATGTCAGCAACACCTGAATTGGAGCCTCCTAAAAGGCCTTCAATCCCCTATGACAACTCTGCAAGCTCATCAGACAAGTTGGTTAAGCGTCCACCTCCGTCAAGGTCATTGAATTTTGACACTCCAGAAAAATGA 1242 0.4106 MSSSEIPSKTPQFPSSESLFKDPIEELSSKMPQHTCKRGVALLLKGETARRKIEFSSPRKISKLADKSLELPEKYENLGEFFNSLDSSIRLLRLKGEMTSFTNIRPKIETLTKRRFTYGHLAQLKFILPEAIAIKEILVYDTRTSCMKPDFHVTINSDAVEFDAKLISEPGTMSMRKLFRARLKDFWESHPKDDEIPEEILPEPFNHPKQEPMFKTPSIFSAATLSTSDNAVNIDPDVSVPNETSLEALYQQPALAASHMPQSFRKRFSQRVKENVPTKFPSDSFQPSAVPLSELRMKINSTSEVTLSHQITSPTELVLEAPSSEACSSRVTPATPSKTIECSEIKVVSVERVEDMSTPLRFVSTPSRLMSATPELEPPKRPSIPYDNSASSSDKLVKRPPPSRSLNFDTPEK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01324 413 CDD Cdt1_m 55 209 IPR014939 -
Vifa3g01324 413 SMART CDT1_2 71 203 IPR014939 -
Vifa3g01324 413 Pfam DNA replication factor CDT1 like 71 157 IPR014939 -
Vifa3g01324 413 MobiDBLite consensus disorder prediction 365 413 - -
Vifa3g01324 413 PANTHER DNA REPLICATION FACTOR CDT1 24 400 IPR045173 GO:0003677|GO:0030174|GO:0071163
Vifa3g01324 413 SUPERFAMILY "Winged helix" DNA-binding domain 67 205 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01324 Vifa-Chr3 339319750 339321281 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01324 70 209 Core DNA Replication Machinery Family AT2G31270 59.286 2.20e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01324 K10727 - jre:108996045 303.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01324 3 339319750 339321281 Vifa3g01324 3 339319750 339321281 ECH