Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01319 ATGGCACTAAACAGGAACCAATTCTACAACCTTGGATATCAAGCTCTCCCACCTATCATAACTCAGGATAATCCATTTCACTATCACCCTCCACAGCCTGTTTCAGACTATGCTTTTCCCATATTTGCCATTGTTGTTCTCAGCATCATTGCTACCATTTTGTTACTCCTCAGCTACATCACTTTTCTAACCAAATTCTGCTCAAACTGGAATCAAGTTAATCCAACAAGATGGATTTCAGTCCTTCGAGCTCGACAGAACGATGAAGATCACTTCATCGCATTGTCTCCTACACCGTGGAACCGAGGATTAGACGAATCGGTCATCAGAGAAATCCCATCATTTCAGTTTATAAGAGGTGAATGTGAAGATCAAAGTGTGTATGGTTGTGTGGTTTGTTTGACAGAGTTTCAAGAGCATGATGTGATAAAAATTCTACCAAATTGTACCCATGCTTTTCACTTGGATTGCATTGATATTTGGCTTCAAACAAATTCTAATTGTCCTCTTTGTAGATCAAGCATTTCAGGCAATAATACAACAAATACACCATTTGATATTATCATAGCTCCAAGCTCTTCTCCTCAGAATTCTTCTCAGTTACTCTCTAACTCATCAAGTGATGAAGATTTTGTTGTCATTGAACTAGGTGGAGAAGAAAATGAGGTTCAACAAGAAAAAAGTGACTCAAGAGGAAGCATAGCACATAGTAGAAACTATCACTCTACAAGAGAAATGAAACCAAAGTGTCCTTATGTTTCCATCATGGGAGATGAGTGTGTTGATATGATCAGAAAGAAAGATGACTTGTTTTCGATTCAGCCGATTCGAAGATCTTTCTCATTGGATTCTGCAAATGATAGACAAATGTTCATGGATGTCCAAGCCATTATACAACAAAATGAGGCTAGTGCAAGTGAGGATTGCAATAGCAGAAGTAAAAGAGCATTCTTTCCATTTTGTTATTATGGAAAGGGATCCAAAAATGTAATGCTTCCATTTGGAGAATGA 1011 0.3788 MALNRNQFYNLGYQALPPIITQDNPFHYHPPQPVSDYAFPIFAIVVLSIIATILLLLSYITFLTKFCSNWNQVNPTRWISVLRARQNDEDHFIALSPTPWNRGLDESVIREIPSFQFIRGECEDQSVYGCVVCLTEFQEHDVIKILPNCTHAFHLDCIDIWLQTNSNCPLCRSSISGNNTTNTPFDIIIAPSSSPQNSSQLLSNSSSDEDFVVIELGGEENEVQQEKSDSRGSIAHSRNYHSTREMKPKCPYVSIMGDECVDMIRKKDDLFSIQPIRRSFSLDSANDRQMFMDVQAIIQQNEASASEDCNSRSKRAFFPFCYYGKGSKNVMLPFGE 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01319 336 CDD RING-H2_EL5-like 130 172 - -
Vifa3g01319 336 PANTHER RING-H2 FINGER PROTEIN ATL16 18 334 IPR044600 GO:0016567|GO:0016740
Vifa3g01319 336 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Vifa3g01319 336 SUPERFAMILY RING/U-box 129 176 - -
Vifa3g01319 336 Pfam Ring finger domain 130 172 IPR001841 -
Vifa3g01319 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 177 IPR013083 -
Vifa3g01319 336 MobiDBLite consensus disorder prediction 218 242 - -
Vifa3g01319 336 MobiDBLite consensus disorder prediction 220 242 - -
Vifa3g01319 336 SMART ring_2 130 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01319 Vifa-Chr3 338804158 338805168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01319 5 300 C3H Transcription Factor Family AT1G04360 39.474 3.46e-61 198
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01319 3 338804158 338805168 Vifa3g01319 3 338804158 338805168 ECH
Vifa3g01319 3 338804158 338805168 Vifa5g02668 5 887828821 887829780 PCT