Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01316 ATGTTTCAGGAAGAGACGGGCAAACAAGAGTCGGCAAAAGAAATTCGATACCGAGGAGTGAGGCGGCGTCCGTGGGGAAAGTATGCTGCCGAGATTCTTGATCCAGCTCGTCGAGGTACGCGGGTGTGGCTAGGTACATTTCTCACGGCCGAGGAAGCCGCAAGAGCTTATGACCGTGCCGCGTTTGAAATGAGAGGTGCTTTAGCCATTCTTAATTTTCCACATGAGTATCCTTCAATGAACTCTTCGACGTCAATACTAGCACCCAATTTATCTTCATCTTCTTGCACTGAATCAAGTTACCGATATGAACATGGAAAGGAAGTTATTGAGTTTGAGTATTTGGATGATAAATTGTTGGAGGATCTTCTTGATTGTGATGAGTGTGAAATTACTACTCACAAAAACTTGCATAAGTAG 420 0.4429 MFQEETGKQESAKEIRYRGVRRRPWGKYAAEILDPARRGTRVWLGTFLTAEEAARAYDRAAFEMRGALAILNFPHEYPSMNSSTSILAPNLSSSSCTESSYRYEHGKEVIEFEYLDDKLLEDLLDCDECEITTHKNLHK 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01316 139 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Vifa3g01316 139 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vifa3g01316 139 PANTHER DNA-BINDING DOMAIN 10 125 IPR044808 GO:0003700|GO:0009873
Vifa3g01316 139 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Vifa3g01316 139 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Vifa3g01316 139 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Vifa3g01316 139 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Vifa3g01316 139 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Vifa3g01316 139 Pfam AP2 domain 16 66 IPR001471 GO:0003700|GO:0006355
Vifa3g01316 139 SUPERFAMILY DNA-binding domain 16 76 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01316 Vifa-Chr3 338191107 338191612 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01316 13 128 AP2-EREBP Transcription Factor Family AT3G23230 60.331 6.95e-43 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g01316 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01316 - - gmx:100781487 147.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01316 3 338191107 338191612 Vifa3g01316 3 338191107 338191612 ECH
Vifa3g01316 3 338191107 338191612 Vifa5g02669 5 887832007 887832435 PCT