Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01315 ATGCATATCATGAGTAGTTACTCTTTCTTCCATGATCCAGACCTAGAAATGTTACAACAAGATCCTGCTAATAATATTCATCATGTTCATCGTGACCCTACTCATGATTATCTTTCCTTTGATATGGTTGACCAAGTACCAACAAAAAGTGAGTCAAATCAACCTAAAGAAAGATCATACATAGGTGTAAGGAAAAGACCTTGGGGGAAATTTGCTGCAGAGATCAGAGATACAACAAGAGGAGGAAGAAGGGTTTGGCTTGGAACTTTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGAAAAGGATCTTCACCTGCACTTGCACTCAAGGAGAGACACTATAACCAAAGAAAGTTGTCATCAAAAGGTGTAA 399 0.3835 MHIMSSYSFFHDPDLEMLQQDPANNIHHVHRDPTHDYLSFDMVDQVPTKSESNQPKERSYIGVRKRPWGKFAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMREKDLHLHLHSRRDTITKESCHQKV 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01315 132 ProSiteProfiles AP2/ERF domain profile. 59 117 IPR001471 GO:0003700|GO:0006355
Vifa3g01315 132 PANTHER DNA-BINDING DOMAIN 46 111 IPR044808 GO:0003700|GO:0009873
Vifa3g01315 132 Pfam AP2 domain 60 109 IPR001471 GO:0003700|GO:0006355
Vifa3g01315 132 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Vifa3g01315 132 PRINTS Ethylene responsive element binding protein signature 83 99 IPR001471 GO:0003700|GO:0006355
Vifa3g01315 132 SMART rav1_2 59 123 IPR001471 GO:0003700|GO:0006355
Vifa3g01315 132 CDD AP2 60 108 IPR001471 GO:0003700|GO:0006355
Vifa3g01315 132 Gene3D AP2/ERF domain 59 117 IPR036955 GO:0003700|GO:0006355
Vifa3g01315 132 SUPERFAMILY DNA-binding domain 60 114 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01315 Vifa-Chr3 337877488 337877959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01315 29 120 AP2-EREBP Transcription Factor Family AT3G23240 57.609 6.34e-31 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g01315 AP2 8.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01315 K14516 - gmx:100811486 119.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01315 3 337877488 337877959 Vifa3g01315 3 337877488 337877959 ECH