Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01314 ATGCCTCAAAGAACGAATCTCTCTTTCTTTCACAACCCAGATTTCAAAATTTTGCAGCAAAACCCTTTTGAAATTTCCTTCGAATCATTTGGTATTAATCATGATTATCTTCCCTTCAGTACGATCGATTTCTCACCGAGTTCGCAGACAAAGTCTACCAAGTCCATGAAGTCTTCTGGAGATAAAGAAGTATTGCAGAATTATAAGATGGATCAAAAGTCATATATAGGTGTACGAAAAAGGCCTTGGGGGAAGTTTGCAGCAGAGATTAGAGACACAACAAGAGGAGGGAAAAGGGTTTGGCTTGGAACCTTTGATATTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTGATAATGCTCTTCTCAATTTTTCAGTTCAAAGGGTCAAACAATCTTTGCAAGATATTCAATATGATTGCAGAAAAGGATCTTCACCTGCACTTGCACTCAAGGAGAGACACTATAACCAAAGAAAGTTGTCATCAAAAGGTGTAAAGAATAATAATAAATCAGGAAAACAAGATCAATCACAGGAATCATCATCATCAAGTATTTTGGTGTTAGAGGATTTGGGAGTTGAATATCTTGAGCAACTTCTAACTATATCTGATAATCCAAGTACAAGCAACAACAGCTACTTCAAATCAACTTGTTGA 678 0.3673 MPQRTNLSFFHNPDFKILQQNPFEISFESFGINHDYLPFSTIDFSPSSQTKSTKSMKSSGDKEVLQNYKMDQKSYIGVRKRPWGKFAAEIRDTTRGGKRVWLGTFDIAEDAALAYDQAAFSMRGDNALLNFSVQRVKQSLQDIQYDCRKGSSPALALKERHYNQRKLSSKGVKNNNKSGKQDQSQESSSSSILVLEDLGVEYLEQLLTISDNPSTSNNSYFKSTC 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01314 225 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Vifa3g01314 225 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Vifa3g01314 225 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
Vifa3g01314 225 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Vifa3g01314 225 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Vifa3g01314 225 MobiDBLite consensus disorder prediction 168 190 - -
Vifa3g01314 225 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Vifa3g01314 225 MobiDBLite consensus disorder prediction 166 190 - -
Vifa3g01314 225 CDD AP2 73 131 IPR001471 GO:0003700|GO:0006355
Vifa3g01314 225 FunFam Ethylene-responsive transcription factor 2 73 133 - -
Vifa3g01314 225 SUPERFAMILY DNA-binding domain 74 133 IPR016177 GO:0003677
Vifa3g01314 225 PANTHER DNA-BINDING DOMAIN 57 211 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01314 Vifa-Chr3 337822459 337823136 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01314 72 215 AP2-EREBP Transcription Factor Family AT3G23240 55.102 2.44e-51 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g01314 AP2 4.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01314 K14516 - gmx:100811486 208.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01314 3 337822459 337823136 Vifa3g01549 3 403893967 403894599 ECH
Vifa3g01314 3 337822459 337823136 Vifa3g01314 3 337822459 337823136 ECH
Vifa5g02671 5 888035983 888036645 Vifa3g01314 3 337822459 337823136 PCT