Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01312 ATGCCTCAAAGAACGAATCTCTCTTTCTTTCACAACCCAGATTTCAGAATGCTGCAGCAAAACCCTTCTGAAATTTCCTTCCAATCATTTGATATTAATCATGATTATCTTCCCTATAGTACGATCGATTTCTCATCGAGTTCGCAGACAAAGTCTACCAAGTCCATGAAGTCATCTCGAGATAAAGAAGTATTGCAGAATAATAAGACGGGTGAAAAGTCATATATAGGTGTGAGAAAAAGGCCTTGGGGGAAATTTGCTGCAGAGATTAGAGACACAACAAGAAGAGGGAAAAGGGTTTGGCTTGGAACCTTTGATAGTGCTGAAGAAGCTGCTTTAGCTTATGACCAAGCTGCATTTTCAATGAGAGGTGATAACGCTCTTCTCAAATTTTCAGTTCAAAGGGTCAAACAATCTTTGCAAGATATTCAATATGATCCTTGCTGTAATATTGAGTCTTTTTCACCTGCACTTGCACTCAAAGAAAGACATTATAACCAAAGAAAATTAATGCCATCATCATCAAAAGGTAAAAAGGGTAAAGGGAAATTACAAGAATCAGAGGAATCATCATCAAGTGTGTTGGTGTTAGAGGATTTGGGAGTTGAATATCTTGAGCAACTTCTAACTATATCTGATCATCAAACTACAAGCTCCACCAACTTCTAA 669 0.3752 MPQRTNLSFFHNPDFRMLQQNPSEISFQSFDINHDYLPYSTIDFSSSSQTKSTKSMKSSRDKEVLQNNKTGEKSYIGVRKRPWGKFAAEIRDTTRRGKRVWLGTFDSAEEAALAYDQAAFSMRGDNALLKFSVQRVKQSLQDIQYDPCCNIESFSPALALKERHYNQRKLMPSSSKGKKGKGKLQESEESSSSVLVLEDLGVEYLEQLLTISDHQTTSSTNF 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01312 222 SMART rav1_2 74 138 IPR001471 GO:0003700|GO:0006355
Vifa3g01312 222 PRINTS Ethylene responsive element binding protein signature 98 114 IPR001471 GO:0003700|GO:0006355
Vifa3g01312 222 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Vifa3g01312 222 Gene3D AP2/ERF domain 73 134 IPR036955 GO:0003700|GO:0006355
Vifa3g01312 222 MobiDBLite consensus disorder prediction 45 64 - -
Vifa3g01312 222 MobiDBLite consensus disorder prediction 169 192 - -
Vifa3g01312 222 Pfam AP2 domain 74 124 IPR001471 GO:0003700|GO:0006355
Vifa3g01312 222 PANTHER DNA-BINDING DOMAIN 53 212 IPR044808 GO:0003700|GO:0009873
Vifa3g01312 222 FunFam Ethylene-responsive transcription factor 2 73 133 - -
Vifa3g01312 222 SUPERFAMILY DNA-binding domain 74 133 IPR016177 GO:0003677
Vifa3g01312 222 CDD AP2 73 131 IPR001471 GO:0003700|GO:0006355
Vifa3g01312 222 ProSiteProfiles AP2/ERF domain profile. 74 132 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01312 Vifa-Chr3 337302777 337303445 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01312 67 217 AP2-EREBP Transcription Factor Family AT3G23240 51.948 1.81e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g01312 AP2 4.9e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01312 K14516 - gmx:100811486 197.593