Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01310 ATGGAAGGAGTTTCGAATTCGACAAATGGAAATGTTGATCAGATAAAGTATAGAGGAATTCGTAGGAGACCATGGGGAAAATATGCAGCAGAGATTCGCGATCCGACAAGGAAAGGAACAAGAATATGGCTTGGAACATTTGATACTGCTGAACAAGCTGCAAGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCTATTCTAAACTTCCCTAATGAATATCAAGGTCCTAATTCATCAACTTCTTCATTACCTATGCCTCTTACAGCGCCTCCTCCTCCTCCTCCTAATCATAATCCTAATCTTAATATTAATCCTAATCCACCTTCTTCTTCATCTTTATCTTCTTACTCTGTTGATGATAACTATGATTTTGAATTTTTGGACAATAAGATGCTTTATGAACTCCTTCAAGATGGAACACAGTGA 438 0.379 MEGVSNSTNGNVDQIKYRGIRRRPWGKYAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYQGPNSSTSSLPMPLTAPPPPPPNHNPNLNINPNPPSSSSLSSYSVDDNYDFEFLDNKMLYELLQDGTQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01310 145 SMART rav1_2 16 80 IPR001471 GO:0003700|GO:0006355
Vifa3g01310 145 MobiDBLite consensus disorder prediction 74 119 - -
Vifa3g01310 145 ProSiteProfiles AP2/ERF domain profile. 16 74 IPR001471 GO:0003700|GO:0006355
Vifa3g01310 145 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Vifa3g01310 145 CDD AP2 16 75 IPR001471 GO:0003700|GO:0006355
Vifa3g01310 145 SUPERFAMILY DNA-binding domain 16 75 IPR016177 GO:0003677
Vifa3g01310 145 MobiDBLite consensus disorder prediction 89 106 - -
Vifa3g01310 145 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Vifa3g01310 145 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vifa3g01310 145 PANTHER DNA-BINDING DOMAIN 14 113 IPR044808 GO:0003700|GO:0009873
Vifa3g01310 145 Pfam AP2 domain 16 67 IPR001471 GO:0003700|GO:0006355
Vifa3g01310 145 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01310 Vifa-Chr3 336947363 336947800 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01310 14 140 AP2-EREBP Transcription Factor Family AT3G23230 50.394 4.12e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g01310 AP2 5.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01310 - - cam:101502737 162.925
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g02672 5 888702454 888702879 Vifa3g01310 3 336947363 336947800 PCT