Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01309 ATGGATTTTGATTCCCCATTCTTCCAATACCAAAACCTTAACACTTCATTCTCAGATTCCTCTTCTTTTTCAGAACCCTTTTCATGGGATGATTTCTTCATTTTCAATGAAGACACCACAAACAATAACATCGCCATTCCCTTGAACTTCACTGATCAAAATGATCAAAACACACAAGAACTTTCATTCAATTCAAATTCCAATTCCAACACTTCAGTTTCTCAAACAAGCACAGAATCACAAGAAGTTTCATCCAATTCTACTCATTTAGCACAATCATCATCATTATCATCACCTAAGAGGCCATATAGAGGAGTCAGGAGAAGACCGTGGGGGAAATTCGCAGCCGAAATAAGAGATTCGACAAGAAAAGGTGTTCGAGTTTGGATTGGAACATTTGATACAGCTGAAGAAGCTGCATTAGCTTATGATCAAGCAGCTTTATCGACAAGAGGTTCGATGGCAGTGTTGAATTTTCCTGAACAAGTTGTGAGAGAATCATTAAAAGATATGGTGAACAAGTGTTGGGAGAAAGATGGTTCTTCTCCTGTTTTGGCACTTAAGAAGAAACACACTATGAAAAGAAAGTCTAAGGCAAGTAGTAACAAAAAGAGCAACAGGGTAGAAAGGGAAATGAAGAATGTTGTTTCAGAAAATGTTTTGGTGTTGGAAGATTTGGGTTCTGAATATCTAGACCAACTTCTTAGCTTTTAA 714 0.3725 MDFDSPFFQYQNLNTSFSDSSSFSEPFSWDDFFIFNEDTTNNNIAIPLNFTDQNDQNTQELSFNSNSNSNTSVSQTSTESQEVSSNSTHLAQSSSLSSPKRPYRGVRRRPWGKFAAEIRDSTRKGVRVWIGTFDTAEEAALAYDQAALSTRGSMAVLNFPEQVVRESLKDMVNKCWEKDGSSPVLALKKKHTMKRKSKASSNKKSNRVEREMKNVVSENVLVLEDLGSEYLDQLLSF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01309 237 MobiDBLite consensus disorder prediction 190 210 - -
Vifa3g01309 237 Gene3D AP2/ERF domain 102 162 IPR036955 GO:0003700|GO:0006355
Vifa3g01309 237 Pfam AP2 domain 103 152 IPR001471 GO:0003700|GO:0006355
Vifa3g01309 237 SMART rav1_2 102 166 IPR001471 GO:0003700|GO:0006355
Vifa3g01309 237 MobiDBLite consensus disorder prediction 56 100 - -
Vifa3g01309 237 CDD AP2 103 162 IPR001471 GO:0003700|GO:0006355
Vifa3g01309 237 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Vifa3g01309 237 PRINTS Ethylene responsive element binding protein signature 126 142 IPR001471 GO:0003700|GO:0006355
Vifa3g01309 237 SUPERFAMILY DNA-binding domain 103 161 IPR016177 GO:0003677
Vifa3g01309 237 ProSiteProfiles AP2/ERF domain profile. 102 160 IPR001471 GO:0003700|GO:0006355
Vifa3g01309 237 FunFam Ethylene-responsive transcription factor 2 101 161 - -
Vifa3g01309 237 MobiDBLite consensus disorder prediction 56 108 - -
Vifa3g01309 237 PANTHER DNA-BINDING DOMAIN 64 234 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01309 Vifa-Chr3 336441741 336442454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01309 61 236 AP2-EREBP Transcription Factor Family AT3G23240 50.556 3.80e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa3g01309 AP2 9.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01309 K14516 - gmx:100780775 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01309 3 336441741 336442454 Vifa3g01309 3 336441741 336442454 ECH
Vifa5g02674 5 890173112 890173894 Vifa3g01309 3 336441741 336442454 PCT