Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01301 ATGCCGTCGCTACTCTCTCCCGGTAAAATCCACATACTAGAGATCGATAATTTCAAATCCTACAAGGGCTTACAAAGAATCGGTCCCTTCTCTGACTTCACCGCAATTATTGGTCCCAACGGCGCCGGAAAATCTAACCTAATGGACGCAATCAGTTTCGTTCTTGGTGTTAGAACCGGCCAACTCCGTGGTGCTCAATTGAAGGATCTCATATACGCCTTCGATGATAGAGATAAAGAACAGAAAGGAAGACGAGCCTTCGTTCGCATGGTTTATCAACTCGCTAACGAATCTGAAATCAGGTTCACCAGAACTATCACATCAGCAGGAGGAAGCGAGTACCGTATCGATGACAGCGTCGTTACTTGGGATGTCTACAATGCTAGACTCAAATCGCTAGGCATTCTTGTTAAGGCTCGCAACTTTTTGGTCTTTCAGGGTGATGTGGAATCCATTGCGTCGAAGAATCCTAAGGAGCTTACTGGCCTTATTGAGCAGATATCGGGATCTGATGAGCTCAAGAGAGACTATGAGGAGTTTGAAGAAGAGAAAGCTATTGCTGAGGAGAAATCAGCACTTGTTTATCAGAAGAAAAAGACAATGGTTATGGAGAGGAAGCAGAAGAAAGAACAAAAGGAAGAGGCGGAGAAACATATACGACTCCAAGATGAATTGAAATCTATGAAGAAAGAACATTTCTTGTGGCAGTTGTTCAATTTAGAAAATGATTTTGTTAATACAACTGAGGAACTTGAAGTTGAAAAAAGAAGCCGTGAAGGTGCTATTGAAGAATTAGAAAAATTTGAAAATGAAATCAGTAAAAAGAAAAAAGAGCAAGCCAAACATCTGAAAGAAGTTACGCTACGTGAGAAGAAAATAACTGAGAAAAGCAACAAACTCGACAAGACTCAACCAGAGCTTCTTAAATTAAAGGAGGAAATGTCTCGCATTAGTACAAAAATAAAAAAAGGGAACAAGGAGCTTGTCAAAAAAAAGGAAGACCAAAGGAAGCATGCCGTTGAGATAGCAAAGCTAAAGAATGATATTCAGGATCTTACGGCAAAAGTGGAAGACGTGCAGGAAAAGAGTCGAAATGTTGGTGGCCAGCTCAAGTTAGATGGCAATGACTTGGAAGAATATTATAGAATAAAGGAGGAAGCCGGGATGAAAACCGCAAAGCTTAAAGAGGAAAAAGAACTGTTAGATAGGCAGCAACATGCTGACACTGAAGCTCAAAGGAATTTGGAAGAGAATCTTCAACAATTAGAAAGCCGGGAGTCTGAGCTGGATTCACAGGAAAAAAAACTGCGAGAAAGACTTAAAAAAATTCTTGATAGTTCTGCAAAGAATAGGGATGCTGTTGAAAATTTGAATAAAGAACTGCGTGAGATGAAAGAAAAACATAATGAGTCCAAGAGAAAATATGATAACTTGAAGATAAGAATTGGAGAAGTAGAAAAGGATCTACGCGAATTGAAGGCTGATAGACATGAAAATGAGAGAGGTGCTAAATTGTCTCAGGCTGTGGCGACTCTGAAGCGCTTGTTTCAAGGAGTCCATGGTCGCATGACCGATCTTTGTAGGCCAACCCAGAAGAAGTATAACTTGGCCGTTACTGTTGCTATGGGTAAATTAATGGATGCTGTTGTTGTTGAGGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGAGCAGAGGCTTCCTCCCCAGACATTTATTCCTCTACAATCTATTCGAGTGAAGCCAATAATGGAAAGATTACGCACATTAGGTGGTACAGCAAAACTGTTTGATCCCCCCTTGGAGAAGGCAGTTCTATTTGCTGTTGGGAATACTCTTGTTTGTGAAGACCTTGAGAAAGCCAAACTTTTAAGCTGGAGTGGAGAGAGGTTTAAAGTTGTAACTGTGGACGGAATTTTGCTGACGAAATCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGATCAAAACAGTGGGATGACAAGAAATTTGAAGCATATGTTAAGAAAAAAGAGCAGTATGAATCGGAGCTGGAAGAGCTAGGATCAATAAGAGATATGCATCTCAAAGAGTCTGAATTAGAGGGGAAAAAAAGCGGACTTGAAAAGAAAATTCAATATGCTGAGATTGAAAAGAGGAGCATTGAAGACAAACTTTTAAATTTTAGTCACGAAAAGGGGACCATCAAAGAAGAAATTAAACGTAGTAGTCCAGAACTGAAGAAGTTAGGTGATGCTGTTCAAAAGAGGAATATAGAATTACTTACTCTTGAGAAAAGGATAAATGAGATTACTGATCGGATATACAGAGACTTCAGCAAGTCAGTTGGGGTTGCAAATATTCGTGAGTATGAAGAAAATCGACTCAAGGATGCTCAAAATGTAGCAGAGGAGAGGCTGAAGCTGAGTAGCCAACTTTCAAAGTTGAAATATCAGTTGGAGTATGACCAGAATCGAGACATGAGTTCAAGAATTCAAGAATTGGAATCTTCCGTAAGTGCTTTGGAGACCGATTTAAAACGGGTACAGAACAAAGAGGCTGAAGCAAAGTTAGCAGCAGAGAAGGTTACCGAAGAGATCAATCAGTTGAAGGATGAAGCTAAAGAGTGGAAATCAAAGTCAGAGGATTGTGAAAAGGATATCCAGGAATGGAAGAAGAAGACTTCTGCAGCCACAACAAACTTATCCAAACTGAATCGTCTGATAAACTCAAAGGAGGCTCAGATTGAGCAGATATTGGGGCAAAAGAAGGAGATATCAGAGAAGTGTGAACTAGAGCAGATTAGCCTTCCAACCATATCAGATCCTATGGATACTGATAGCTCAACTCCGGGTCCAGTTTATGACTTTGATAAACTCAGTAAAAAAGATAAGAAACACTCTGGCAGGGATAAAATAGAGCTAGATTTTAAGCAAAAAATGGATGCATTGATATCTGAAATCGAAAGAACAGCACCCAATTTGAAGGCATTGGACCAGTATGAGGCTCTGCTTGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTTAGGAAAGAAGAGAAGGAAAAAGCCGATAGATTCAATGTAGTAAAGCAGAAGAGATATGATATGTTCATGGATGCTTTCAACCATATAGCTGGTAATATAGATAAAATTTACAAACAACTAACGAAGAGCAACACACATCCTCTGGGTGGAACAGCATACCTAAATTTGGAAAATGATGATGATCCATTTCTACATGGCATGAAGTACACTGCTATGCCACCAACAAAGCGGTTCCGCGACATGGAACAACTGTCTGGTGGTGAAAAGACTGTTGCTGCGCTTGCATTGCTATTCTCCATCCATAGGCCTTCACCATTTTTCATACTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCGAAGGTTGCTGGCTTTATTCGTTCAAAATCTTGTGAAGGAGCTAGGGTTAATCAGGATGCTGATGGCGGAAATGGTTTTCAGAGTATTGTAATATCTCTGAAAGACAGCTTCTATGACAAAGCTGAAGCGTTAGTTGGGGTTTTCAGGGACTCTGGAAGAGGTTGTTCGAGTACTCTCACATTTGATCTAAGCAAGTATCAGGAGTCCTAA 3624 0.4026 MPSLLSPGKIHILEIDNFKSYKGLQRIGPFSDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDRDKEQKGRRAFVRMVYQLANESEIRFTRTITSAGGSEYRIDDSVVTWDVYNARLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEEFEEEKAIAEEKSALVYQKKKTMVMERKQKKEQKEEAEKHIRLQDELKSMKKEHFLWQLFNLENDFVNTTEELEVEKRSREGAIEELEKFENEISKKKKEQAKHLKEVTLREKKITEKSNKLDKTQPELLKLKEEMSRISTKIKKGNKELVKKKEDQRKHAVEIAKLKNDIQDLTAKVEDVQEKSRNVGGQLKLDGNDLEEYYRIKEEAGMKTAKLKEEKELLDRQQHADTEAQRNLEENLQQLESRESELDSQEKKLRERLKKILDSSAKNRDAVENLNKELREMKEKHNESKRKYDNLKIRIGEVEKDLRELKADRHENERGAKLSQAVATLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKPIMERLRTLGGTAKLFDPPLEKAVLFAVGNTLVCEDLEKAKLLSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKFEAYVKKKEQYESELEELGSIRDMHLKESELEGKKSGLEKKIQYAEIEKRSIEDKLLNFSHEKGTIKEEIKRSSPELKKLGDAVQKRNIELLTLEKRINEITDRIYRDFSKSVGVANIREYEENRLKDAQNVAEERLKLSSQLSKLKYQLEYDQNRDMSSRIQELESSVSALETDLKRVQNKEAEAKLAAEKVTEEINQLKDEAKEWKSKSEDCEKDIQEWKKKTSAATTNLSKLNRLINSKEAQIEQILGQKKEISEKCELEQISLPTISDPMDTDSSTPGPVYDFDKLSKKDKKHSGRDKIELDFKQKMDALISEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEKEKADRFNVVKQKRYDMFMDAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENDDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARVNQDADGGNGFQSIVISLKDSFYDKAEALVGVFRDSGRGCSSTLTFDLSKYQES 1207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01301 1207 Coils Coil 170 190 - -
Vifa3g01301 1207 Gene3D - 477 594 - -
Vifa3g01301 1207 Coils Coil 444 495 - -
Vifa3g01301 1207 Coils Coil 384 442 - -
Vifa3g01301 1207 Gene3D - 8 230 IPR027417 -
Vifa3g01301 1207 Pfam SMC proteins Flexible Hinge Domain 517 624 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vifa3g01301 1207 Coils Coil 251 285 - -
Vifa3g01301 1207 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1207 - -
Vifa3g01301 1207 SUPERFAMILY Smc hinge domain 481 674 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vifa3g01301 1207 Coils Coil 335 362 - -
Vifa3g01301 1207 MobiDBLite consensus disorder prediction 937 957 - -
Vifa3g01301 1207 Coils Coil 198 231 - -
Vifa3g01301 1207 SMART SMC_hinge_2 517 627 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vifa3g01301 1207 FunFam Structural maintenance of chromosomes 1A 9 224 - -
Vifa3g01301 1207 Gene3D - 595 653 - -
Vifa3g01301 1207 Coils Coil 999 1019 - -
Vifa3g01301 1207 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Vifa3g01301 1207 Coils Coil 307 327 - -
Vifa3g01301 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 331 IPR027417 -
Vifa3g01301 1207 Pfam RecF/RecN/SMC N terminal domain 10 1187 IPR003395 -
Vifa3g01301 1207 PIRSF SMC 8 1205 IPR024704 GO:0005524|GO:0016887
Vifa3g01301 1207 Coils Coil 823 892 - -
Vifa3g01301 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 869 1190 IPR027417 -
Vifa3g01301 1207 Coils Coil 900 927 - -
Vifa3g01301 1207 Coils Coil 703 723 - -
Vifa3g01301 1207 Gene3D - 1030 1207 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01301 Vifa-Chr3 335295515 335317698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01301 8 114 Structural Maintenance of Chromosomes family AT5G61460 31.579 3.12e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01301 K06636 - gmx:100791953 1857.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01301 3 335295515 335317698 Vifa3g01301 3 335295515 335317698 ECH