Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01293 ATGCATATAGGTCAAACGAAAACAGCTTCAGTAAAATGTCTGATCAACAGCATTTCTCGATTCGTTCTTTTGGTTTCTTGCCAAACAGTGAAACCTATACCCTTCCAAAAGATCTGCAACAATATGGTCGGCGTGTTAAAGCGTTTGAAGCCAGTGCTCGATGACATTATGGATTACAATATTCCTTTTCATGAAAATTTATGTATAGTATGCGAAGAATTGGATATACGGGTTAACGAAGCAAGAGATTTCATTGAAAAATGGAGTCCTAAGATGAGCAAGATTCACAGTGTTCTACGAAGTGGAACATTGTTGATCACGATACAGAACACTTCACTTGACATTTGTCACATGATTGTTAAATCGTTACAGTCACCTCCATCTGCATCGGTTTTGGCTAACCTCCAGCACTATATCGAAGAACTTCAGTGTCTCAAGAAGGAAACGACAATGGTCTATATAGAAAAGGAACTGGGAAACCGAAATATTGAACCTTGCAATGAGAATCTAAAAGAAATTATAGAGTTACTTAACTTGACATCGAACCAGGAGCTTTTGAAAGAAACTATTGCTGTGGAGAAAGAAAGATTGATCGCTGAAGAACACAAAATGAAAGGAAACATGGAAGAAATCAATGAAGTTGTGAACCTTGTCCGCAACTTACGTGATTATGTGGTTAAAACCGAGTGCTTTGCAGTTGAAAGCGATGTTTCTTTCCCTCCATACTTTCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCGGGTCAAACATACGAGAGGCAATCCATTCAAAAGTGGCTTGATCACGGGCTGACTGTTTGTCCGAAGACTCGTCAAAGACTGGCTCATACGAAGCTCATTCCCAATTATACCGTCAAAGCTATGATAGCAACTTGGTCTGAGGAAAATAACACCAATCGCATGAGTAACTTTGAGCATAATACTGGAAATGTATTTGAAGAACAAAAGGGTGATAATTCTTTCGGATCACATGTAGAAATCGAAAAGTGGGAGCTACAATCCCCATATATTCACAGCAGAAGTGAATCATTTTCAAGTTCGATTTCTAGTAGTGATTGTCTACTCGCAGTTTCAAAAGATGTGTCAAGGATGTCTGATAAGCATCAAAATGTGAAGTTGTCGTCCGTAGATCCAGGAGGGATGGAAAATGGGAGAAATAGTAACAGTAATACTAATAGTTATTTAAGAGTTGATTCTCATTTTGTGTCGAACTCCGAATTGAGTGAATTGACTACTTCATCTCATGTCAATCAATTGATCAAAGACCTCCAAAGCCAATCAACTGAAGCGCAAACTGCTGCCGCAGAAGAATTGAGGCTCCTTACAAAGCATAACACAGAAAACCGTATCATTGTAGGGCAATGTGGGGCTGTGACACATTTACTTTCACTGCTATATTCAAACGGGAAAGTAACACAAGAGCATGCCGTTACAGCACTGCTGAATTTGTCGATTAATGAAAACAACAAGGCCTTGATTATGGAAGCAGGAGCTATAGAGCCCCTTATCCATGTTTTAAAGACAGGAAACGACGGTGCCAAGGAGAATTCTGCAGCAGCGCTATTCAGCCTATCTGTAATGGAAAACGGTAAAGCGAAAATCGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGAACTTCTTGCCTCCGGAACAGTTAGAGGAAAGAAAGATGCTGCTACTGCTTTATATAACCTGTCAATATTTCACGATAATAAGGCTCGCATAGTTCAAGCTGGAGCTGTGCCATTTCTGGTTCGGTTAACAGATCCTGCTGACGGAATGGTTGACAAGGCTGTTGCTCTTCTGTCAAACCTGTCGACGATTTCCGAAGGAAGGTTGGAAATTACAAGAGAAGGTGGAATTCCTTCGTTAGTTGAAATCGTTGAATCGGGTTCTCAGCGGGGAAAGGAAAATGCTGCTTCCATTCTCCTACAGTTATGCCTTCATAGTTCAAGGTTTTGTACACTTGTTTTACAAGAAGGAGCTGTACCTCCTCTAGTTGCATTATCTCAATCTGGAACACCAAGAGCAAAGGAAAAGGCACAACAACTTCTCAGCCATTTTCGTAATCAGCGGGAAGGAGCTAAGACCAAGGGAAAATCATGA 2145 0.407 MHIGQTKTASVKCLINSISRFVLLVSCQTVKPIPFQKICNNMVGVLKRLKPVLDDIMDYNIPFHENLCIVCEELDIRVNEARDFIEKWSPKMSKIHSVLRSGTLLITIQNTSLDICHMIVKSLQSPPSASVLANLQHYIEELQCLKKETTMVYIEKELGNRNIEPCNENLKEIIELLNLTSNQELLKETIAVEKERLIAEEHKMKGNMEEINEVVNLVRNLRDYVVKTECFAVESDVSFPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPKTRQRLAHTKLIPNYTVKAMIATWSEENNTNRMSNFEHNTGNVFEEQKGDNSFGSHVEIEKWELQSPYIHSRSESFSSSISSSDCLLAVSKDVSRMSDKHQNVKLSSVDPGGMENGRNSNSNTNSYLRVDSHFVSNSELSELTTSSHVNQLIKDLQSQSTEAQTAAAEELRLLTKHNTENRIIVGQCGAVTHLLSLLYSNGKVTQEHAVTALLNLSINENNKALIMEAGAIEPLIHVLKTGNDGAKENSAAALFSLSVMENGKAKIGRSGAVKALVELLASGTVRGKKDAATALYNLSIFHDNKARIVQAGAVPFLVRLTDPADGMVDKAVALLSNLSTISEGRLEITREGGIPSLVEIVESGSQRGKENAASILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAKTKGKS 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01293 714 ProSiteProfiles U-box domain profile. 238 312 IPR003613 GO:0004842|GO:0016567
Vifa3g01293 714 Pfam Armadillo/beta-catenin-like repeat 458 497 IPR000225 GO:0005515
Vifa3g01293 714 Pfam Armadillo/beta-catenin-like repeat 499 538 IPR000225 GO:0005515
Vifa3g01293 714 Pfam Armadillo/beta-catenin-like repeat 544 579 IPR000225 GO:0005515
Vifa3g01293 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 510 552 IPR000225 GO:0005515
Vifa3g01293 714 SMART arm_5 499 539 IPR000225 GO:0005515
Vifa3g01293 714 SMART arm_5 621 661 IPR000225 GO:0005515
Vifa3g01293 714 SMART arm_5 458 498 IPR000225 GO:0005515
Vifa3g01293 714 SMART arm_5 540 580 IPR000225 GO:0005515
Vifa3g01293 714 SMART arm_5 581 620 IPR000225 GO:0005515
Vifa3g01293 714 CDD RING-Ubox_PUB 240 292 IPR045210 -
Vifa3g01293 714 PANTHER U BOX DOMAIN-CONTAINING 36 702 - -
Vifa3g01293 714 SMART Ubox_2 242 305 IPR003613 GO:0004842|GO:0016567
Vifa3g01293 714 Gene3D - 394 503 IPR011989 -
Vifa3g01293 714 Pfam U-box domain 240 310 IPR003613 GO:0004842|GO:0016567
Vifa3g01293 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 592 633 IPR000225 GO:0005515
Vifa3g01293 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 593 IPR000225 GO:0005515
Vifa3g01293 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 469 511 IPR000225 GO:0005515
Vifa3g01293 714 Gene3D - 504 711 IPR011989 -
Vifa3g01293 714 SUPERFAMILY ARM repeat 424 701 IPR016024 -
Vifa3g01293 714 SUPERFAMILY RING/U-box 237 313 - -
Vifa3g01293 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 321 IPR013083 -
Vifa3g01293 714 Coils Coil 691 711 - -
Vifa3g01293 714 MobiDBLite consensus disorder prediction 379 406 - -
Vifa3g01293 714 FunFam RING-type E3 ubiquitin transferase 239 311 - -
Vifa3g01293 714 FunFam RING-type E3 ubiquitin transferase 414 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01293 Vifa-Chr3 334683764 334687176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01293 11 714 U-box Gene Family AT3G54790 51.383 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01293 - - mtr:25484253 1162.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g01293 3 334683764 334687176 Vifa3g01293 3 334683764 334687176 ECH