Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01290 ATGGCAAAAAAATATGAGGGACCTGCTATAGGAATTGATCTTGGCACAACCTATTCATGTGTTGCTGTATGGAATGATAAAAACAATAGAGCAGAGATCATACACAATGATCAAGGAAACAAAACCACTCCTTCTTTTGTTGCTTTTACGAATGATCAAAGGTTGATTGGCGAAGCTGCTAAAAATCAGGCTGCTTCAAACCCAACAAACACTGTTTTTGCTTTCATGAGAACAAAACAAACTCTTATTGCTGCAGATGCAAAGAGATTGTTTAATCTCTCAATTCGTTGTGCACCACGTGGCCTTCCTTTCCATGTATGCTTTTCTATCGATGCTGATGGTATATTAAAAGTCTCTGCAGAGGAAGAAACAAGTGGTAATAAGAAAGATATTACAATAACAAATGAGAATGGAAGATTGTCGAGGGAAGAAATTGAGAGAATGATACAGGAAGCTGAGCACTTCAAGTCCGAAGATATGAAGCATGTGAAGAAGGCTAGAGCAATGCGTGCTTTAGATGACTATGTGTATAACATGAAGAAAATAATGAATGATAATAGCGTAACTTCCAAGCTCACTGCCGTTGACAAAGTGAAGATCAATTCTTCAATTGTAAAGGGAGAAGAATTGATTGATGACGAAGACCATGAAACATTTGTGTTTGTGGACGTTCTGAGGGAGCTTGAGAGCATCTTTGAATCAGCTATGAAAAAGATCAACAAAGGTTACTCTAATGATGAAAGTGATTCTGATTCTTAA 759 0.3729 MAKKYEGPAIGIDLGTTYSCVAVWNDKNNRAEIIHNDQGNKTTPSFVAFTNDQRLIGEAAKNQAASNPTNTVFAFMRTKQTLIAADAKRLFNLSIRCAPRGLPFHVCFSIDADGILKVSAEEETSGNKKDITITNENGRLSREEIERMIQEAEHFKSEDMKHVKKARAMRALDDYVYNMKKIMNDNSVTSKLTAVDKVKINSSIVKGEELIDDEDHETFVFVDVLRELESIFESAMKKINKGYSNDESDSDS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01290 252 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vifa3g01290 252 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 88 173 IPR029047 -
Vifa3g01290 252 PRINTS 70kDa heat shock protein signature 38 50 - -
Vifa3g01290 252 PRINTS 70kDa heat shock protein signature 8 21 - -
Vifa3g01290 252 PRINTS 70kDa heat shock protein signature 60 68 - -
Vifa3g01290 252 FunFam heat shock 70 kDa protein-like 3 204 - -
Vifa3g01290 252 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 169 242 IPR029048 -
Vifa3g01290 252 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 85 169 IPR029047 -
Vifa3g01290 252 SUPERFAMILY Actin-like ATPase domain 8 78 IPR043129 -
Vifa3g01290 252 Gene3D - 1 87 - -
Vifa3g01290 252 Pfam Hsp70 protein 94 238 IPR013126 GO:0005524|GO:0140662
Vifa3g01290 252 Pfam Hsp70 protein 9 78 IPR013126 GO:0005524|GO:0140662
Vifa3g01290 252 PANTHER HEAT SHOCK PROTEIN 70KDA 9 78 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01290 Vifa-Chr3 333182680 333183503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01290 91 246 Calmodulin-binding Proteins AT3G12580 48.428 1.28e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01290 K03283 - lja:Lj0g3v0151879.1 176.407