Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g01289 ATGGGTCTTAGAGATGTTGGTGCTTCACTTCCACCCGGGTTTAGGTTTTATCCAAGTGATGAAGAATTAGTCCTTCATTACCTTTTGAAAAAAATCACAAATGAGAATGTTATCAAAGGTACCTTAGAAGAAATCGACTTACATACATGCGAACCATGGCAACTTCCCGAAGTGGCTAAGCTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATTCCACAGGCTTTAGGACCAATAGGGCTACGACATCTGGATATTGGAAAGCGACAGGAAAAGATCGAACGGTGTATGATCCAATCACTCGTGAGGTTGTAGGGATGAGAAAAACTTTGGTGTTCTATAGGAATAGAGCTCCAAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTCGGTTGGAAACCCCTCATATGCCACCTAAGGAAGACTGGGTATTGTGCAGAGTATTTCATAAAGGAAAAACAGAAAACAATGGCAAGATAAGTCCACAAGACATGTATGAAACCATAGCTCCATCCTTAACCAACCAAACCATGCCAATTGGTTATAACTATGACCAATTTGCTTCTTTGTCCTCATCAATGACAACTCATCATTACAATCAAAATGATTCTTTGTTGAATCTCCTTCAATTATCCAAGGAAACAAACACCAATTGTAGTAGTGTTACTCAAATTAGTCCTAAATGTGATGATGGATATGGATTCTTGTGGGACATGGATTTGGAAGATCATCATGATGGTGTGGAGTCATCAAACTTGGAAGGAATTAGATTCGAGGTTGATAATAATAATAGTAGTATGGTCTTGATATAA 828 0.3877 MGLRDVGASLPPGFRFYPSDEELVLHYLLKKITNENVIKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYSTGFRTNRATTSGYWKATGKDRTVYDPITREVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENNGKISPQDMYETIAPSLTNQTMPIGYNYDQFASLSSSMTTHHYNQNDSLLNLLQLSKETNTNCSSVTQISPKCDDGYGFLWDMDLEDHHDGVESSNLEGIRFEVDNNNSSMVLI 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g01289 275 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Vifa3g01289 275 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Vifa3g01289 275 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Vifa3g01289 275 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Vifa3g01289 275 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g01289 Vifa-Chr3 332495920 332499029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g01289 6 236 NAC Transcription Factor Family AT1G56010 45.082 6.96e-64 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa3g01289 NAM 1.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g01289 - - gmx:100783645 425.631